Cruoricaptor ignavus: IMZ16_03880
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Entry
IMZ16_03880 CDS
T06873
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
civ
Cruoricaptor ignavus
Pathway
civ03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
civ00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IMZ16_03880 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
civ03021
]
IMZ16_03880 (rpoC)
03400 DNA repair and recombination proteins [BR:
civ03400
]
IMZ16_03880 (rpoC)
Enzymes [BR:
civ01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IMZ16_03880 (rpoC)
Transcription machinery [BR:
civ03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IMZ16_03880 (rpoC)
DNA repair and recombination proteins [BR:
civ03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IMZ16_03880 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
DUF4554
DUF7490
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QOR74582
UniProt:
A0A7M1T6T3
LinkDB
All DBs
Position
complement(833987..838252)
Genome browser
AA seq
1421 aa
AA seq
DB search
MSNKNKSSRFNKITIGLASPESILQESRGEVLKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHINLVVPVAHIWYFRSLPNKIGYL
LGMPSKKLDMIIYYERYVVIQQGAAKKADGSDFEEMEFLTEEEYLDILDTLPAENQYLED
SDPNKFIAKMGAEAVEDLLKRIDLDALSYDLRHKAHNEGSKQRRTEALKRLNVVEALRSA
NTRMINRPEWMIMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQEAVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPDLQLHECGLPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKEAHSTEDHKVL
GEGLTFYSPEEAEIAYNEGKVSLNAKVRCRLPIKENGEITTKLTETTVGRILFNQIVPEQ
VGFVNELLTKKSLRNVIGRILADTDFPTTVKFLDDMKDMGYSNAFKGGLSFSLGDIVVPE
EKQQMIAQAVENVDEIRANYNMGLITDTERYNQVIDVWTNTNAGLTEMIMNRMKTDQGGF
NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSTGSEIIENPIVANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIITEDDCHTLRGTEITPLKKNDEIVE
RISERILGRISLHDIYHPETDEKIVGADELIDENLAKTIENLGLESVEVRSPLTCEARKG
ICAKCYGRNLATGKPIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNVSVNPSIVAR
RDGIVEMDEIRTVTSEDENGNTAEVVVSRSSEFRLVSDNEQRTPLMVANIPYGSVISVKP
GAKVSKGDLIAKWDPYNAVIIAEASGKVEYEDIIQGTSFQLEIDEQTGFEEKVIIESRSR
KAVPTLRVVDAKGEEQKSYNLPVGAHLMVNDGEKIKAGKILIKIPRKSAKAGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGERKTYLVKLSNQILVQEN
DFVRAGTPLSDGSVTPDDILRIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVEIVDGGDTQFLEGSLEHKYDFIEENNRIFGMKVVVDAGDSKELQPGQMISARELRDE
NSKLKREDLKLVEAREALPATATPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVSGK
VDELNGLKENVIVGHRIPAGTGLKEYQNVIVGSKKEFADYE
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacaaaaataaatcaagtaggtttaataaaatcacgattggactggcttcgccg
gaatccatcctgcaggaatcaagaggcgaggtgctgaagccagaaaccatcaactaccgc
acgcacaagccggaaagagacggacttttctgcgagaaaatcttcggcccggtgaaggat
tacgaatgtgcctgcggaaagtataagagaatccgctacaaaggcatagtgtgcgataga
tgcggtgtggaagtaaccgagaagaaagtgcgccgcgaaagaataggccacatcaatctg
gtagtgccggtggcacacatctggtatttccgctcactgccaaataagataggctacctt
ctcggaatgccgagcaagaagctggatatgatcatctactacgaaagatacgtggtgata
cagcagggtgcggcaaagaaagccgacggctccgactttgaggaaatggaattccttacc
gaggaagaatatctggacatcctggatacgctacctgctgaaaatcagtatcttgaagat
tctgatccgaataagttcatcgcaaaaatgggtgcggaagccgtggaagatttgctgaaa
agaatcgacctggatgcactttcttacgacctgagacataaggcgcacaacgaaggctct
aagcagagaagaacggaggcgctgaaaaggctgaatgtggtggaagcgctgcgaagcgcc
aatacaaggatgataaaccggccggaatggatgataatgcgggtgctgcccgtgattccg
ccggaacttcgcccgcttgttccactggatggcggccgctttgcaacatccgatctgaac
gacctttaccgcagggtaatcatcagaaacaaccgcctgaaaaggctattggaaatcaaa
gcgccggaagtaattttgcgtaatgaaaagcgaatgcttcaggaagcggtggattcactt
ttcgacaatacaagaaaatcttctgcggtaaaatccgagagcaacaggccgctgaaatcc
ctttccgattcattgaaagggaagcagggtaggttccgccaaaaccttttgggtaaaagg
gtggattactcggcgcgttcagtaatcgtggtaggtccggatttgcagcttcacgaatgc
ggtctgccgaaagatatggcggcagaactttataagccgttcattatcaggaagttaatt
gaaagaggcattgtaaaaacggtaaaatctgcaaagagaattatcgacaggaaagagccc
gttgtttacgatattctggaaaatgtgatgaagggccaccctgtccttctgaaccgtgcg
cctacgcttcacaggctgggtatccaggctttccaaccgaaaatgatcgagggtaaggcc
attcagctgcacccattggtaaccacggccttcaatgctgactttgatggggaccaaatg
gcggtgcacttgccgcttggcccagaggctatcctggaagcgcagctgctgatgctgggc
tctcagaacatcctgaatcctgcaaacggctcgccgattacggtgccttctcaggatatg
gtgcttgggctttattttatgaccaaggaagcgcactctaccgaagatcacaaggttttg
ggtgaaggccttactttctactcaccggaagaagcggaaatcgcctacaacgaaggcaag
gtttcgctgaacgctaaagtacggtgcaggctgccaatcaaggaaaatggtgaaatcacc
acgaaacttacggaaactacggtgggtagaattctgttcaaccaaatcgttccagaacaa
gtaggcttcgtaaatgagcttttaacgaaaaaatctctgcggaatgtaatcggccgtatc
ttggctgataccgatttcccaaccacggtgaaattcctggacgatatgaaggatatgggc
tacagcaatgcctttaagggtgggctttccttctcgcttggcgacattgtggtgccggaa
gaaaagcagcagatgattgctcaggctgtggagaatgtggatgaaatccgtgcgaattat
aatatgggtctcatcaccgatacggagcgctacaaccaggtaattgatgtgtggacaaat
acgaacgccggccttacggagatgattatgaacaggatgaagaccgaccagggtggcttc
aattccgtttatatgatgctggattcaggtgcccgtggttccaaggagcagattcgccag
ctttccggtatgagggggctgatggcgaagccacagaaagccggctccacaggttcggaa
attattgaaaacccgattgttgcgaactttaaagaaggcctttccatcctggaatacttc
atttccacgcacggtgcccgtaaaggtcttgccgatacagctctgaaaactgccgatgca
ggatatctgaccagaaggctggtggatgtggctcaggatgtgattattacggaggacgat
tgccacacacttcgcggaacggaaattacgccgctgaagaagaacgacgaaatcgtggaa
agaatttccgagagaattctgggtagaatttccctgcacgacatctatcatcctgaaacg
gacgagaaaatcgtgggagcggatgaactgattgacgagaatttagcaaaaacaatagaa
aaccttggcttagaaagcgtggaagtgcgttctccgctgacttgcgaagcgaggaaaggt
atctgcgcaaaatgctatggcagaaacttggcaaccggcaagccaatccatatgggtgag
gctgtgggcgttatcgcggcgcaatccatcggtgaacctggtacccagcttacgctgagg
accttccaccagggtggtacggcagggaatgtctctgtaaatccttccatcgtggcaagg
agggatggtatcgtggaaatggatgaaatccgcacggtaacttccgaggatgagaacgga
aacacggcagaagttgtagtttcgcgctcttcggaattccgccttgtttcggataatgag
cagagaacgccactgatggtggccaacattccttacggttccgtaatttccgtgaaaccg
ggtgctaaggtgagcaaaggcgatttgattgcaaaatgggatccttacaacgccgtaatc
atcgcggaagcttccggtaaagtggagtacgaagacattatccaaggtacttccttccag
ctggaaatagatgagcagactggttttgaagagaaggtaatcatagaatcgagaagccgc
aaagccgtgccaacacttcgggtggtggatgcgaaaggtgaagagcagaaatcttacaac
ctgcctgttggagcgcaccttatggtgaacgacggcgagaaaatcaaggctggtaagatt
ttgattaaaatcccgagaaaatcagcgaaggcaggcgatattaccggtggtcttccaagg
gttacggagcttttcgaagcaaggaatccatccaaccctgccgttgtaacggagattgac
ggggtggtatcttacggaaaaatcaagcgtggaaaccgcgaacttatcgtggaagcgaaa
acaggcgagagaaaaacctaccttgtgaaactttccaaccaaatcctggtgcaggaaaac
gacttcgttcgtgctggtacgccgctttcagacggttccgtaacgccggatgatatcctg
agaatcaaaggacctaccgcggttcaggaatatttggtgaacgaaattcaggaggtgtac
agattgcagggtgtgaagattgatgacaagcactttgaaatcatcgtgcgccagatgatg
acgaaggttgaaatcgtggatggcggcgatacgcagttcctggaaggctcgctggaacat
aaatacgacttcatcgaggaaaataataggattttcggaatgaaggtggtagtggatgca
ggagattccaaggagcttcagcctgggcagatgatttccgcaagagaacttcgcgatgaa
aattccaagctgaagagggaagacctgaaacttgtggaggcaagggaagcgcttcctgca
acggcaacgccggtgcttcagggtatcacaagggcagcgcttcagacgaaatcctttatg
tccgcagcatctttccaggaaacaaccaaggtgctgaacgaagcagcggtttcaggtaag
gtggacgagctgaacggcctgaaggaaaatgtaatcgtagggcacagaatccctgctggt
acaggcttgaaggagtatcagaatgtaatcgtaggctctaagaaggaatttgcagattac
gaataa
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integrated database retrieval system
