Cruoricaptor ignavus: IMZ16_03885
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Entry
IMZ16_03885 CDS
T06873
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
civ
Cruoricaptor ignavus
Pathway
civ03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
civ00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IMZ16_03885 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
civ03021
]
IMZ16_03885 (rpoB)
03400 DNA repair and recombination proteins [BR:
civ03400
]
IMZ16_03885 (rpoB)
Enzymes [BR:
civ01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IMZ16_03885 (rpoB)
Transcription machinery [BR:
civ03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IMZ16_03885 (rpoB)
DNA repair and recombination proteins [BR:
civ03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IMZ16_03885 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QOR74583
UniProt:
A0A7M1T6I5
LinkDB
All DBs
Position
complement(838365..842186)
Genome browser
AA seq
1273 aa
AA seq
DB search
MSKTLKNTQPDERINFSSVKGKVITPDFLDIQIESFKEFFQLDTLPEDRKKEGLYKTFLE
NFPISDSRNQFVLEFMDYELGTPKYSIDECIERGLTYAVPLKAVLKLYCTDPEHEDFETM
IQDVYLGPVPYMTPSGSFIINGAERVIVTQLHRSPGVFFGQTYHANGSKLYFSRIIPFKG
SWMEFTTDINNVMYAYIDRKKKLPLTTLLRAIGYESDKDILQLFDLAEEVKATKASLKKY
EGRTLAARVLNTWFEDFVDEDTGEVVSVERNEIILDRETVLEKEHIDMILESGVKSVLIH
KENSGEFTIIQNTLQKDPTNSEKEAVEYIYRQLRNAEPPDEETARGIIEKLFFSEQRYSL
GEVGRYRLNKKLGLKISEDTEVLTKEDIIAIVRHLIELVNSKAEIDDIDHLSNRRIKTVG
EQLAGQFGVGLSRIARTIRERMNVRDNEVFTPRDLVNAKTLTSVINSFFGTNQLSQFMDQ
TNPLSEITHKRRLSALGPGGLSRERAGFEVRDVHHTHYGRICPIETPEGPNIGLISSLGL
YAKINNLGFIETPYRKVENGRVDLESPAVYLNAEDEEGKVIAQANVEMSESGDFESDRII
ARVDGDYPVVEPQQVDLVDVAPNQISGISASLIPFLEHDDANRALMGSNMMRQAVPLLRP
EAPIVGTGLERQVAKDSRVLINAEGNGVVEYVDAEKIVIKYERTEDEELVSFEPATKTYN
LTKFRKTNQSTTITLRPNVKVGERVEKGQVLCDGYATENGELAIGRNLVVAFMPWKGYNF
EDAIVINERVVREDWFTSIHIDEYSLDVRDTKLGMEELTSDIPNVSEEATKDLDENGMIR
IGAEVKPGDIMIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKADSSLSGVVVDKK
LFSRNIKDKKKRSEEKLKLEEIDNDYQVKFDELRGILVEKLNVLVNGKVSQGVTNDLNEE
VISKGTKFTLKLLQSIDDYVNISGAEWTVDEDRNELINQLLHNYKIKVNSIRSVMNREKD
AVTIGDELAPGIMKTAKVYIAKKRKLKVGDKMAGRHGNKGIVSRIVREEDMPFLEDGTPV
DIVLNPLGVPSRMNIGQIYETVLGWAGQKLGLKFATPIFDGASLEEITKYTDEAGLPKFG
NTYLYDGGTGERFTQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQ
RFGEMEVWALEAFGASNILREILTVKSDDVTGRTKTYEAIAKGEAMPEPGIPESFNVLLH
ELQGLGLDVRLEE
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaacactgaagaacactcagccagacgaaagaattaatttctcttcggtaaag
gggaaggtgatcacgccggatttcctggacatccagatcgagtccttcaaggaattcttc
cagcttgatacgctacctgaagaccgcaaaaaggaggggctttacaaaactttccttgag
aatttccctatctccgactccagaaaccaattcgtgctggagtttatggactacgagctg
ggaacgccaaagtacagcatagatgaatgtatagagcgcgggcttacctatgccgtgccg
ctgaaggcagtgctgaagctgtactgcaccgatccggagcacgaggactttgaaactatg
attcaggatgtgtacctgggccccgtgccttatatgacgccttccggatcattcattatc
aacggtgccgagcgcgtgatcgttacgcagctgcaccgctcgccgggcgtattcttcggg
cagacttaccacgccaacggctccaagctttatttctccagaattatcccgttcaagggt
tcctggatggagtttactacggatatcaacaatgtgatgtatgcctacatcgaccggaag
aagaagctcccgcttactacgctgctgcgcgcgataggctatgaatccgacaaggatatc
ctccagcttttcgatcttgcagaggaagtaaaagccaccaaggcaagcctgaaaaaatac
gaaggcagaacgctcgcggcacgcgtgctgaatacctggttcgaagattttgtggatgaa
gataccggcgaggtagtttccgtggagagaaatgaaatcatcctggaccgggagaccgtt
cttgaaaaagagcacatcgatatgatcctggaatccggcgtgaagtccgtgctgattcac
aaggaaaactccggagagtttaccatcatccagaataccctgcagaaagaccctaccaac
tctgagaaagaagcggtggagtacatctaccgtcagctacgcaacgcggaaccgcctgat
gaagaaaccgcaaggggcatcatagaaaaacttttcttctccgagcaaagatactccctg
ggagaggtaggcaggtacaggctgaataagaagcttgggctgaagatctccgaggatact
gaggttttaacgaaagaagacattatcgccatcgttcgccaccttatcgagttggtgaac
tccaaggcggagatcgacgatattgaccatctctccaaccgtaggattaaaaccgtaggc
gagcagcttgccggtcagttcggtgtggggctgtccagaatcgcaagaaccatccgcgaa
cgaatgaatgtacgcgataacgaggtatttactccaagagatcttgtaaatgccaagacg
ctcacctcggttatcaactcgttcttcggtaccaaccagctgtcccagtttatggaccag
accaacccgctttccgaaattacccacaagagaaggctttcggcactcgggccgggcggg
ctttcaagagagcgcgcaggtttcgaggtgcgggatgtgcaccacacacactacggcagg
atttgcccgatcgagacgccggaagggccgaatatcggtttgatctcctcgctcggtctt
tatgccaaaatcaacaatttgggcttcatagagaccccatacagaaaagtggaaaacggc
agagtagatctggaatctccggcggtatatctcaacgccgaggatgaagaaggcaaggta
atcgcacaggcgaatgtggaaatgtctgaaagcggcgacttcgagtcggacaggatcatc
gcccgtgtggatggagactaccccgtggtagagccgcagcaggtagatcttgtggatgtg
gcaccgaaccagatttccggtatctccgcctcccttatccctttccttgagcacgacgat
gcgaaccgcgcgctgatgggctccaacatgatgcgccaggcagtgccgctcctccgcccg
gaagccccaatcgtaggtaccgggctggaaaggcaggtggcaaaagacagccgcgtgctc
atcaacgctgaaggaaacggcgtggtagagtatgtggatgctgagaaaatcgtgataaaa
tacgagcgtacggaagacgaggagctggtttcctttgagcccgcaacaaaaacatacaac
cttacaaaattcagaaaaaccaaccagagtaccaccatcaccctacggccaaatgtaaaa
gtaggagagcgtgtggaaaaaggacaggtgctctgcgatggctacgctacggaaaacggc
gagctcgccatcgggcggaacctcgtggtggcatttatgccgtggaaggggtataacttt
gaggacgcgatagtaatcaacgaaagagtggtacgcgaagactggtttacttccatccac
atcgacgaatattcgctagatgtgcgcgataccaagctcggtatggaggagctgacttcc
gatatcccaaatgtgtccgaggaggctaccaaagatctggacgaaaacggtatgatccgc
atcggggcagaggtaaaaccgggtgatattatgattggaaagatcactccaaaaggagaa
tctgaccctacgccggaggagaaactcctgcgagccatcttcggcgataaagccggagat
gtaaaggacgcatccctgaaggcagactcttcacttagcggggtagtggtagataaaaaa
ctcttctccagaaacataaaggataagaaaaagcgcagcgaggagaaactaaaactcgag
gaaatcgataatgattaccaagtaaaatttgacgagcttcgcggtatccttgtggaaaaa
ctcaatgttttggtaaacggcaaagtttcccaaggggtaacgaatgacctgaatgaagag
gtaatttccaaaggaacaaagttcacgctgaagctcctgcagtccatagacgattatgtg
aacatcagcggagcagagtggactgtggatgaggacaggaatgagctgatcaatcagctg
ctgcataattataagattaaagtaaacagcatccgtagcgtgatgaaccgtgagaaggat
gccgtgacgataggtgatgagcttgccccgggaattatgaagacggcaaaagtgtacatc
gctaaaaagcgcaagctgaaagtaggtgataaaatggcgggccgccacggaaacaagggc
atcgtttcgcggattgtgcgcgaagaagatatgccgttcctcgaagacggaacgcctgtg
gacatagtgctgaatccactgggggtgccatcccgtatgaacatcgggcagatttatgaa
accgttctcggctgggcagggcagaagcttgggctgaaatttgccacgccgattttcgac
ggcgcatcgctggaagaaatcacgaagtacaccgatgaagccggccttccgaaattcggt
aacacctatctgtatgatggtggtaccggcgaaagattcacgcagcctgccactgtgggc
gtaatctatatgctgaaacttgggcatatggtggatgataagatgcacgcccgctctatc
ggcccgtactctctcatcacgcagcaacctttgggcggtaaggctcagttcggtggtcag
cgtttcggtgagatggaagtctgggcgttggaagccttcggtgcatccaacattcttcgt
gaaatccttaccgtgaaatccgacgatgtgacgggaagaacgaaaacttacgaggcgatt
gccaaaggtgaagcaatgccggagcccggtatcccggaatccttcaatgtattgctgcac
gaactgcagggccttggattggatgtgaggttagaggaataa
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