Cruoricaptor ignavus: IMZ16_09880
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Entry
IMZ16_09880 CDS
T06873
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
civ
Cruoricaptor ignavus
Pathway
civ03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
civ00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMZ16_09880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
civ03019
]
IMZ16_09880
03009 Ribosome biogenesis [BR:
civ03009
]
IMZ16_09880
Enzymes [BR:
civ01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IMZ16_09880
Messenger RNA biogenesis [BR:
civ03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IMZ16_09880
Ribosome biogenesis [BR:
civ03009
]
Prokaryotic type
rRNA helicases
IMZ16_09880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QOR73798
UniProt:
A0A7M1T1Q6
LinkDB
All DBs
Position
2038870..2040534
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AA seq
554 aa
AA seq
DB search
MTLFSETELRPEILQAVSDLGFERPTEIQQQTIPFISSDSRDLIALAQTGTGKTAAFSLP
ILDMIDESSRKIQLLVLCPTRELCLQIAKDIKNFTKYLPNVKSVAVYGGSSIMEQIRALK
EKPQIIVGTPGRVIDLINRRALDFSEIQWLVLDEADEMLSMGFKDDLETILSETPETKQT
LLFSATMNREVERISRNYLTEPHRISVGKINEVKKNIRHEYYVVGGRQKREALKRLIDAN
PNQYSIIFCRTRMETQDVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVNSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMAIIKPEESRKLRQIKAS
TKIEIEEAQIPTGEEIIKAQVGGVFEKLFTEHEDYFEFDDSLIPDVSEFSKEELVHKLLQ
FQLRDLAMYYKDKKDLSSQDLVEEAEGRRDRRGRERDRGRGKERGERRRNTRGGENMTRF
FFNLGKKDNLRKTDVLDIINKASGKSRRRPDIGDIEIMEKFSFFEVEKSFENEILSNISA
MKFKGRDMRAEVAN
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgactttattttctgaaactgaactgcgcccggaaatcctccaggcggtcagcgatttg
ggctttgagcgaccaaccgaaattcagcagcagacaatcccctttatttcttcagactcg
cgcgaccttatcgcgctggctcagaccgggacggggaaaactgcggccttctccctcccg
atccttgatatgatagatgaatccagcaggaaaatccagctcctcgtactttgccctacc
cgggagctctgcctgcagatcgccaaggatataaaaaatttcacaaaatacctcccgaat
gtaaaatccgtcgcggtatatggcggcagcagcataatggagcagatccgcgcactgaaa
gaaaagccgcagatcatagtgggtacgccagggcgcgttattgacctcattaaccgcaga
gccctcgatttttctgagatccagtggctggtgctggacgaggccgatgagatgctctcc
atggggttcaaggacgatctggaaaccatcctcagcgagactcctgaaactaagcagacg
ctgctcttttccgctacgatgaaccgcgaggtggagcgcatttctagaaattaccttaca
gagccgcacagaatttcagtagggaaaattaatgaggttaagaaaaatatccgccacgaa
tattatgttgtgggcggccgccagaagcgcgaggcgctgaagaggctcatagacgcaaat
cctaaccagtattctatcattttctgccgcaccaggatggagacgcaggatgtggcagat
ttccttatgcagaacggctacgctgcagatgcgctccacggggacctgtcccaagcgcag
cgcgataccgtgatgaagaaattccgcctgaaaaacattgacatacttgtggctaccgat
gtggctgcccgcgggctggatgtaaattccctcacccatgtgatccactattcgctgccg
gatgacccagaagtcttcgtgcaccgcagcgggcgtaccgggagagcagggaaggacggc
atctccatggcgatcataaaaccggaagaaagccgcaaactgcggcagataaaagcttcg
accaaaatagaaatagaagaagcgcagatcccgaccggggaagaaatcataaaggcgcag
gtgggcggcgtttttgagaaactatttactgagcacgaggattattttgaatttgacgac
agcctaattccagatgtttccgagttcagcaaggaggagctggtgcacaagctgctgcag
tttcagctgcgcgatcttgctatgtattataaggataagaaagatttgagctctcaggac
cttgtagaagaagccgaggggcgcagagatcgccgtggcagggaacgcgaccgcggcaga
ggaaaggagcgtggcgaaagacgccgcaatacccgcggaggcgagaatatgacgcgcttt
ttcttcaacctgggaaaaaaagacaacctccgcaaaaccgatgtactggatatcatcaac
aaagcatccgggaaatccaggcgcaggccagacatcggagatatagagattatggaaaaa
ttcagtttcttcgaggtggagaaatcttttgagaatgaaattcttagcaatatttcggca
atgaagttcaaaggcagggatatgcgtgccgaggttgcgaactga
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