Caulobacter inopinatus: ABOZ73_04560
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Entry
ABOZ73_04560 CDS
T11542
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ciw Caulobacter inopinatus
Pathway
ciw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ciw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ABOZ73_04560 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ciw03021
]
ABOZ73_04560 (rpoB)
03400 DNA repair and recombination proteins [BR:
ciw03400
]
ABOZ73_04560 (rpoB)
Enzymes [BR:
ciw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABOZ73_04560 (rpoB)
Transcription machinery [BR:
ciw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABOZ73_04560 (rpoB)
DNA repair and recombination proteins [BR:
ciw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABOZ73_04560 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
XDO97694
UniProt:
A0AB39KV67
LinkDB
All DBs
Position
complement(979009..983079)
Genome browser
AA seq
1356 aa
AA seq
DB search
MAQSFTGKKRIRKSFGRIPEAVQMPNLIEVQRSSYEQFLQRETYSGQRRDEGIEAVFKSV
FPIKDFNERSVLEYVSYEFEEPKYDVEECIQRDMTFAAPLKVKLRLIVFETEEETGARSV
KDIKEQDVYMGDIPLMTDKGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHASGKLLFAA
RVIPYRGSWLDFEFDAKDIVYVRIDRRRKLPATTFLYALGMDGEEILTTFYDVVPFEKRE
GGWATPYKPERWRGVKPEFALINADTGEEVAPAGQKISARNAKKFADAGLNTLLLAPEAL
TGRYLARDAVNFSTGEIYAEAGDELDPAAIEALAEQGFSTIDVLDIDHVTVGAYMRNTLR
VDKNTLREDALFDIYRVMRPGEPPTVEAAEAMFKSLFFDSERYDLSSVGRVKMNMRLELD
ASDEMRVLRKEDVLAVLKLLVGLRDGRGEIDDIDNLGNRRVRSVGELLENQYRVGLLRME
RAIKERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSA
LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHARVNKYGFIESPYR
RVVDGKQQEEVVYMSAMEEAKHVIAQANIKLTEGAIVEDLVPGRINGEPTLLQKENVDLM
DVSPKQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLVQSDAPLVGTGMEGVVARDSG
AVVVARRTGVVEQIDGTRIVIRATQEQDPNKPGVDIYRLSKFQRSNQNTCINQRPLVRVG
DKINAGDIIADGPSTELGELALGRNALVAFMPWNGYNFEDSILISERIVRDDVFTSIHIE
EFEVMARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGAEVQPGDILVGKVTPKGESP
MTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVEVRVFNRHGVDKDERALAIERAEID
RLGKDRDDEFAILNRNMTARLRELIVGKTAVSGPKGLSRGEVTADKLAEIQPGLWWQIAL
DDEKAMGELEAMRRQFDEARKRLDRRFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQP
GDKMAGRHGNKGVISKILPIEDMPHLEDGTAVDVVLNPLGVPSRMNVGQIFETHLGWAAA
GLGKQIAGLLEAWQHGGQKAELQKRLGEIYGEHEDLPETEEELVELARNLSKGVPFATPV
FDGAHISDIEDHLSMAGLNPSGQSILFDGQTGEQFKRPVTVGYIYMLKLHHLVDDKIHAR
SIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYE
FIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELENS
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaatcgttcaccggcaagaagcggatccggaagtctttcggccgcatccccgaa
gccgtgcagatgccgaacctcatcgaggttcagcggtcctcctacgaacaattcctgcag
cgcgagacctatagcggtcagcgtcgcgacgaggggatcgaggccgtcttcaagtcggtg
ttcccgatcaaggacttcaacgagcgctcggtgctcgaatacgtctcgtacgaattcgaa
gagcccaagtacgacgtcgaagagtgcatccagcgcgacatgaccttcgcggcgccgctg
aaggtcaagctccgcctgatcgtcttcgaaacggaagaagaaaccggcgcccgctccgtc
aaggacatcaaggagcaggacgtctacatgggcgacatcccgctcatgacggacaagggc
acgttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagatgcaccgttcgccgggc
gtgttcttcgaccacgacaagggcaagacccacgcctcgggcaagctgctgttcgccgcc
cgcgtgatcccgtaccgcggctcgtggctcgacttcgaattcgacgccaaggacatcgtc
tacgtccgtatcgaccgtcgccggaagctgccggccacgaccttcctctatgccctgggc
atggacggcgaagagatcctgacgaccttctacgacgtcgttcccttcgagaagcgtgaa
ggcggctgggccaccccgtacaagccggaacgctggcgcggcgtgaagccggaattcgcc
ctgatcaacgccgataccggcgaggaagtggctccggctggccagaagatcagcgcccgt
aacgcaaagaagttcgccgacgccggcctgaacaccctgctgctggctccggaagccctg
acgggccgttacctggcgcgcgacgcggtcaacttctcgaccggcgaaatctacgccgaa
gccggcgacgagctggacccggccgccatcgaggccctggccgagcaaggcttctcgacc
atcgacgtgctcgacatcgaccacgtcacggtcggcgcctacatgcgcaacaccctgcgc
gtggacaagaacaccctgcgcgaagacgcgctgttcgacatctaccgcgtcatgcgtccg
ggcgagccgcccaccgttgaagcggccgaagccatgttcaagtcgctgttcttcgacagc
gagcgctacgacctgtcctcggtcggccgcgtgaagatgaacatgcgcctggagctggac
gcttccgacgagatgcgcgtcctgcgcaaggaagacgtcctggccgtcctgaagctgctg
gtcggtctgcgtgacggccgcggcgaaatcgacgacatcgacaacctcggcaaccgccgt
gtccgttcggtcggcgagctgctcgaaaaccagtaccgcgtcggcctgctccgcatggag
cgcgcgatcaaggaacgcatgagctcggtcgatatcgacacggtcatgccgcacgacctg
atcaacgccaagccggccgccgccgccgtccgcgaattcttcggctcctcgcagctgtcg
cagttcatggaccagacgaacccgctgtcggaaatcacccacaagcgccgtctgtcggcg
cttggcccgggcggtctgacccgcgagcgcgccggcttcgaagtgcgcgacgtgcacccg
acccactacggccgcatctgcccgattgaaacgccggaaggcccgaacatcggtctgatc
aactctctggcgacccacgcccgcgtgaacaagtacggcttcatcgaaagcccataccgt
cgcgtggtcgacggcaagcagcaggaagaggtcgtctacatgtcggccatggaagaggcg
aagcacgtcatcgcccaggccaacatcaagctgaccgaaggcgcgatcgtcgaggacctg
gtccccggccgtatcaatggtgaaccgaccctcctgcaaaaggagaacgtcgacctgatg
gacgtgtcgccgaagcaggtcgtctcggtcgccgcggccctgatcccgttcctcgagaac
gatgacgccaaccgcgccctcatgggctcgaacatgcagcgtcaggccgtgccgctcgtc
cagtcggacgccccgctcgtgggcaccggcatggaaggcgtcgtggcgcgtgactccggc
gccgtcgtggtcgctcgtcgtaccggcgtcgtcgagcagatcgacggcacgcgtatcgtc
atccgcgccacccaggagcaggacccgaacaagccgggcgtcgacatctaccgcctgtcg
aagttccagcgttcgaaccagaacacctgcatcaaccagcgtccgctggtccgtgtgggc
gacaagatcaacgccggcgacatcatcgccgacggtccgtcgaccgagctgggcgaactg
gccctgggccgcaacgcgctcgtcgcgttcatgccctggaacggctacaacttcgaagac
tccatcctgatctccgaacgcatcgttcgcgacgacgtgttcacctcgatccacatcgag
gaattcgaggtcatggcccgcgatacgaagcttggtccggaagagatcacgcgcgacatc
ccgaacgtgggtgaagaagccctgcgcaacctcgacgaagccggcatcgtggcgatcggc
gcggaagtgcagccgggcgacatcctggtcggcaaggtcacgccgaagggcgaaagcccg
atgacgccggaagaaaagctcctgcgcgccatcttcggtgaaaaggcttccgacgtccgc
gacactagcctgcgcctgcccccgggcgtcgccggcaccatcgtggaagtgcgcgtcttc
aaccgtcacggcgtcgacaaggacgagcgcgcgctcgccatcgaacgcgccgagatcgac
cgtctgggcaaggaccgcgacgacgagttcgcgatcctgaaccgcaacatgaccgcgcgt
ctgcgcgagctgatcgtcggcaagaccgccgtctcgggtcccaagggcctgagccgcggc
gaggtcaccgccgacaagctggccgagatccagccgggcctgtggtggcagatcgcgctc
gacgacgaaaaggccatgggtgagctggaggccatgcgccgtcagttcgacgaagcccgc
aagcgcctggaccgtcgcttcgaggacaaggtcgacaagctgcagcgcggcgacgaactg
cccccgggcgtcatgaagatggtcaaggtcttcgtggccgtgaagcgcaagcttcagccg
ggcgacaagatggccggccgtcacggcaacaagggcgtcatctccaagatcctgccgatc
gaagacatgccgcacctggaagacggcaccgccgtcgacgtcgtgctgaacccgctgggc
gtgccttcgcgcatgaacgtcggtcagatcttcgaaacccacctgggttgggccgccgcc
ggcctcggcaagcagatcgctggtctgctggaagcctggcagcacggtggtcagaaggct
gagctgcagaagcgccttggcgagatctacggcgagcacgaagacctgcccgaaacggaa
gaagagctggtcgaactggcccgcaacctctccaagggcgtgcccttcgcgaccccggtc
ttcgacggcgcccacatcagcgacatcgaggatcacctgtccatggcgggcctcaacccg
tcgggtcagtcgatcctgttcgatggccagaccggggagcagttcaagcgtccggtcacg
gtcggctacatctacatgctgaagctgcaccacctggtcgacgacaagatccacgcccgc
tccatcggcccgtactcgctcgtcacccagcagccgctgggcggtaaggcgcagttcggc
ggtcagcgcttcggggaaatggaggtgtgggctctggaagcttacggcgccgcctacacc
ctgcaggaaatgctgacggtgaagtcggacgacgtggccggccgtaccaaggtctacgag
ttcatcgtgcgcggtgacgacacgttcgaagcgggcatccccgaaagcttcaacgtgctg
gtcaaggaaatgcgctcgctgggcctgaacgtggagctggagaacagctga
DBGET
integrated database retrieval system
