Citrobacter sp. XT1-2-2: M4I31_02910
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Entry
M4I31_02910 CDS
T09034
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cix
Citrobacter sp. XT1-2-2
Pathway
cix03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cix00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M4I31_02910 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cix03019
]
M4I31_02910 (deaD)
03009 Ribosome biogenesis [BR:
cix03009
]
M4I31_02910 (deaD)
Enzymes [BR:
cix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M4I31_02910 (deaD)
Messenger RNA biogenesis [BR:
cix03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M4I31_02910 (deaD)
Ribosome biogenesis [BR:
cix03009
]
Prokaryotic type
rRNA helicases
M4I31_02910 (deaD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
DeaD_C
ResIII
CMS1
AAA_22
DRTGG
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UQX59931
LinkDB
All DBs
Position
596033..597958
Genome browser
AA seq
641 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAQIQPTAEGEELD
METLAAALLKMAQGERSLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER
RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGD
VLQHFTRTRILNKPMNMQLVGDAVPHTGGERRGGGRFSGERREGGRGEGRGFGGERREGG
RGDGRRFSGERREGGRGPRRDDSSAPRRDDSAGRRRFGGDA
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcc
cttaacgatctgggttacgaaaaaccatctccaatccaggcagagtgcattccgcatctg
ctgggcggtcgcgatgttctgggtatggcccagaccggtagcggcaaaacggcagcgttc
tctttaccgctgctcaacaatcttgatcctgagctgaaggcacctcagattctggtgctg
gcaccgacccgcgaactggcggttcaggttgcagaagccatgacggatttctctaaacac
atgcgcggcgtgaacgtggttgccctgtacggcggccagcgttatgacgtgcaattacgt
gccctgcgtcagggaccacagatcgtcgtcggtacgccgggtcgtctgctggatcacctg
aagcgcggtactctggacctctccaaactgagcggtctggtactggacgaagctgatgaa
atgctgcgtatgggcttcatcgaagacgttgaaaccattatggcgcagatcccggaaggt
catcagaccgctctgttctctgccaccatgccggaagcgattcgtcgtattacccgccgc
tttatgaaagagccgcaggaagtacgcattcagtccagcgtcactacccgtcctgacatc
agccagagctactggactgtgtggggcatgcgtaaaaatgaagcgctggtgcgtttcctg
gaagcagaagattttgatgcggcgattatcttcgtccgtaccaaaaatgcgactctggaa
gtggcagaagcgctggagcgtagcggttatagcagcgctgcgctgaacggcgacatgaac
cagtctctgcgtgagcagactctggagcgtctgaaagatggccgtctggatattctgatt
gcaaccgacgttgcggcccgtggcctggacgttgagcgtatcagcctggtcgttaactac
gatatcccgatggactccgaatcttacgttcaccgtatcggccgtaccggtcgtgcgggt
cgtgctggccgtgcgctgctgttcgttgagaaccgcgaacgtcgtctgctgcgtaacatc
gaacgcaccatgaaactgactattccagaagtagaactgccgaacgcagagctgctgggc
aaacgccgtctggaaaaattcgccgcgaaagtacagcagcagctggaaagcagcgatctg
gatcagtaccgtgctctgctggcgcagattcagcctaccgctgaaggcgaagagctggac
atggaaaccctggcagccgcactgctgaaaatggctcagggcgaacgtagcctgatcgta
ccaccagatgcaccgatgcgtcctaagcgtgaattccgcgaccgtgacgatcgtggcccg
cgtgaccgcaacgatcgtggcccgcgtggcgaccgtgaagaccgtccgcgtcgtgaacgt
cgtgacgttggcgatatgcagctgtaccgcattgaagtgggtcgtgatgacggtgttgaa
gtccgccatatcgttggcgcgattgctaacgaaggtgatatcagcagccgttacatcggt
aacatcaagctgtttgcttcccactcgaccatcgaactgccgaaaggtatgccgggcgac
gtgctgcagcactttacccgtacccgcatcctgaacaagccgatgaacatgcagctggtt
ggcgatgcagtaccgcataccggtggtgagcgtcgtggcggtggccgtttcagcggcgag
cgtcgtgaaggcggtcgcggtgaaggccgtggttttggcggtgagcgtcgtgaaggcggt
cgtggtgatggtcgtcgtttcagcggcgaacgtcgtgaaggtggtcgtggcccgcgccgt
gacgattcttctgctccacgtcgtgatgactcagccggtcgtcgtcgtttcggcggtgac
gcataa
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