Citrobacter sp. XT1-2-2: M4I31_03405
Help
Entry
M4I31_03405 CDS
T09034
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cix
Citrobacter sp. XT1-2-2
Pathway
cix02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cix00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
M4I31_03405 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cix03021
]
M4I31_03405 (rpoD)
Transcription machinery [BR:
cix03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
M4I31_03405 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID:
UQX60021
LinkDB
All DBs
Position
complement(693625..695469)
Genome browser
AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAETSNSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDMAPTA
THVGSELSQEEMDEDEDEDEEDDDDSSDDDNSIDPELAREKFAELRTQYEITRDTIKAKG
RSHAAAQEEIQKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPK
KNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVADDVHRGLQKLQQIEEETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES
LRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagcttcttgtccaacgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattcagatcaa
atcgaagacatcatccaaatgatcaatgacatgggtattcaggtgatggaagaagcacct
gatgccgatgatctgctgcttgctgaaacctccaacagcaccgatgaagacgcggaagaa
gcggctgcccaggttctgtccagcgttgagtccgaaatcggccgtacaactgacccggtc
cgcatgtacatgcgtgaaatgggtaccgttgaactgttaacccgtgaaggcgaaatcgac
atcgctaagcgcatcgaagacggaattaaccaggttcaatgctccgttgctgaatacccg
gaagccatcacctatctgcttgagcaatacgatcgcgtagaagctgaagaagcgcgtctg
tccgatctcatcaccggctttgtcgatcctaacgcggaagaagacatggcgccaacggcg
acccacgtcggttctgaactctctcaagaagagatggatgaagatgaagacgaagatgaa
gaagatgacgacgacagcagcgatgacgacaacagcatcgaccctgaattagcgcgtgaa
aaattcgctgagctgcgtacccagtacgaaatcacccgcgatacgatcaaggccaaaggc
cgcagccatgctgccgcgcaggaagaaattcagaagctgtctgaagtgttcaaacagttc
cgcctggtgccgaagcagttcgactacctggtaaacagcatgcgcgtcatgatggaccgc
gtgcgtactcaggaacgtctgatcatgaagctctgcgttgagcagtgcaaaatgccgaag
aaaaacttcatcactctgttcactggcaatgaaaccagcgaaacctggttcaacgcggca
atcgcgatgaacaaaccgtggtctgaaaaactgcacgacgtggcagatgacgttcaccgc
ggcctgcagaaactgcagcagattgaagaagaaaccggcctgaccatcgagcaggttaaa
gatatcaaccgtcgcatgtccatcggtgaggcgaaagcccgtcgtgcgaaaaaagagatg
gttgaagcgaacttacgtctggttatctctatcgccaagaaatacaccaaccgtggtctg
cagttcctggatctgattcaggaaggcaacatcggtctgatgaaagcggttgataagttt
gaataccgtcgtggttacaagttctccacctacgcaacctggtggatccgtcaggcaatt
acccgctctatcgcggatcaggcgcgtaccatccgtattccggtgcatatgattgagacc
attaacaagctcaaccgtatttcccgtcagatgctgcaagagatgggccgtgagccgacg
ccggaagagctggctgaacgcatgctgatgccggaagacaagatccgtaaagtgctgaag
atcgccaaagagcctatctccatggaaacgccgatcggcgacgatgaagattcgcatctg
ggtgatttcatcgaggataccaccctcgagctgccgctggactctgccactaccgagagc
ctgcgtgcggcaacgcacgacgttctggctggcctgaccgctcgtgaagcgaaagttctg
cgtatgcgtttcggtatcgatatgaacaccgaccacacgctggaagaagtgggtaaacag
ttcgacgttacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgtaaactgcgc
cacccgagccgttctgaagtgctgcgtagcttcctcgacgattaa
DBGET
integrated database retrieval system
