Citrobacter sp. XT1-2-2: M4I31_10725
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Entry
M4I31_10725 CDS
T09034
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cix
Citrobacter sp. XT1-2-2
Brite
KEGG Orthology (KO) [BR:
cix00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cix03032
]
M4I31_10725 (topA)
03400 DNA repair and recombination proteins [BR:
cix03400
]
M4I31_10725 (topA)
Enzymes [BR:
cix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
M4I31_10725 (topA)
DNA replication proteins [BR:
cix03032
]
Prokaryotic type
DNA Topoisomerases
M4I31_10725 (topA)
DNA repair and recombination proteins [BR:
cix03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
M4I31_10725 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
CK_II_beta
Toprim_4
DUF4795
Motif
Other DBs
NCBI-ProteinID:
UQX61366
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Position
2261081..2263678
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AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSATKKSADSTSTKTAKKPK
KDERGALVNRMGVDPWHNWDARYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIA
WHLREVIGGDDARYSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEIGADTTTPGGDALPLEVTH
QNDKPFRPVNREQTLAAVSLLEKARYSVLEREDKPTSSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVREYISDNFGKKYLPESANQYASKEN
SQEAHEAIRPSDVAVQAESLKDMEADAQKLYQMIWRQFVACQMTPAKYDSTTLTVGAGDF
RLKARGRILRFDGWTKVMPALRKGDEDRILPAVDKGDTLTLVELTPAQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY
DFTAQMEDSLDQVANHEAEWKGVLDNFFTDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCP
TCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGDDAETNALRAKR
RCQKCGMAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMACTNDECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGIF
LAANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQTDPDGNKSMVRFSRKTKQQYV
AAEKDGKATGWSAFFVDGKWVEGKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctcttgtcatcgttgagtccccggcaaaagccaaaacgatcaacaagtat
ctgggtaatgactacgtggtgaaatccagcgttggtcatatccgtgatttgccgaccagt
ggctcagcaactaaaaagagcgccgactcaacctccaccaaaacggctaaaaagcccaaa
aaggatgaacgtggcgctctcgtcaaccgcatgggtgttgacccgtggcacaactgggat
gcgcgctatgaagtgctgcctggtaaagagaaagttgtttctgaactgaagcaactggct
gaaaaagccgaccacatctatctcgcaaccgaccttgaccgcgaaggggaagccattgca
tggcacctgcgggaagtgatcggcggcgatgacgcacgctacagccgtgtggtgtttaac
gaaattactaaaaacgctattcgtcaggcgtttgaaaaaccgggcgaactgaacatcgac
cgggttaacgcgcaacaggcgcgccgctttatggaccgcgtggtgggctatatggtgtcg
ccgctgctgtggaaaaaaattgcgcgtggtctgtcagcaggccgcgtacagtcggttgcc
gtgcgtctggtggttgagcgcgaacgcgaaatcaaagcatttgttccagaagagttctgg
gaaattggtgctgacacgaccacgcctggaggcgatgcgttgccgcttgaggtgacgcac
cagaatgataaaccgttccgcccggtcaatcgggaacaaacgcttgccgctgtcagcctg
ttggaaaaagcgcgctatagcgtcctggaacgtgaagataaaccgaccagcagcaagccg
ggcgcgccgtttattacctccacgctacagcaggctgcgagcacgcgactgggctttggc
gtgaagaaaaccatgatgatggcgcagcgcttgtatgaagcgggctacatcacctatatg
cgtactgactcaaccaacctgagccaggatgcggtgaacatggttcgcgagtacatcagc
gataattttggcaaaaaatatctgccggagagcgcgaaccagtacgccagcaaagagaac
tctcaggaagcgcacgaagctatccgtccttccgatgtcgccgtacaggcggaatcgctg
aaagacatggaagctgatgcgcaaaaactgtaccagatgatctggcgtcagtttgttgcc
tgtcagatgacgccggcgaaatacgactccaccaccttaaccgtgggcgcgggtgatttc
cgcctgaaagcgcgtggtcgtattctgcgtttcgatggctggaccaaagtgatgcctgca
ttgcgtaagggcgatgaagatcgcatcttaccggccgtggataaaggcgatacgttgacg
cttgtcgaactgacgccagcgcaacactttaccaaaccgcctgcacgtttcagtgaagcc
tcgctggttaaagagcttgaaaagcggggtattggtcgtccatcaacgtatgcgtcgatt
atttccacgattcaggatcgcggctatgttcgtgttgagaaccgtcgcttctatgctgaa
aaaatgggtgaaatcgtcaccgatcgtctggaagaaaacttccgcgaattgatgaactac
gattttaccgcgcagatggaagacagcctcgaccaggtggcgaatcacgaagccgaatgg
aaaggcgtactcgacaacttcttcaccgattttactcagcaactggataaagccgaaaaa
gatcctgaagagggcggtatgcgtccgaaccagatggtgctgaccagtattgattgcccg
acctgcggacgcaagatgggtattcgtaccgccagcaccggcgttttcctcggctgttcc
ggctatgcgctgtcgccgaaagagcgttgcaaaaccaccattaacctggtgccggaaaac
gaagtgctgaacgtgctggaaggcgacgacgcggaaacgaacgctctgcgcgccaaacgt
cgctgccagaagtgcggtatggcgatggacagctaccttatcgatcctaagcgtaagctg
catgtatgtggtaataacccgacctgtgacggctacgagatcgaagagggtgaattccgc
atcaagggttatgacggtcctatcgttgagtgcgaaaaatgtggttctgaaatgcacctg
aaaatggggcgtttcggtaagtacatggcgtgtaccaacgacgagtgcaaaaacactcgt
aagatcctgcgtaacggtgaagtcgctccgccgaaagaagatccggttccgctgccggaa
ctgccgtgtgaaaaatctgacgcgtattttgtgttacgtgatggcgcggcaggtatcttc
ctggcggcaaatacgttcccgaaatcacgtgagacccgcgcgccgttagtggaagagctg
taccgcttccgcgatcgtctgccggaaaaactgcgttatctggcagacgcgccgcagact
gacccggatggcaacaagtccatggttcgtttcagccgtaaaaccaagcagcaatacgtt
gccgctgagaaagacggtaaggcgaccggttggtcagcgttctttgttgacggtaaatgg
gtagaagggaagaaataa
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