Citrobacter sp. XT1-2-2: M4I31_13990
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Entry
M4I31_13990 CDS
T09034
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cix
Citrobacter sp. XT1-2-2
Pathway
cix03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M4I31_13990 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cix03400
]
M4I31_13990 (mfd)
Enzymes [BR:
cix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M4I31_13990 (mfd)
DNA repair and recombination proteins [BR:
cix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M4I31_13990 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UQX57558
LinkDB
All DBs
Position
2924647..2928093
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQHRYTLPASASDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIR
QFTDQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPAMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALREQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY
RLDFFDDEIDSLRLFDTDTQRTLEEVDAINLLPAHEFPTDKTAIELFRSQWRDTFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDIETSAERFQADTL
SRFENRGVDPMRPLLPPHSLWLRVDELFSELKRWPRVQLKTETLANKAANTNLGFQKLPD
IAVQAQQKAPLDALRKFLEGFTGPVIFSVESEGRREALGELLARIKIAPKRILRLDEAVD
NGRYLMIGAAEHGFIDSKRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGTHKLLQADVKL
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLFNDVENIQKTADRLAELVPEARIGI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMESIGFSLYMELLENAVDALKEGREPSLEDLTSQQTEVELRMPSLLPDDYIPDV
NTRLSFYKRIASAKGENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG
NEKGGTIEFAEKNHVNPVWLIGLLQKQPQHFRLDGPTRLKFMQDLSERKTRIDWVRQFMR
QLEENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaacatcgttacacgctcccggccagcgcttccgaccagcgccagttaggc
gaactgaccggcgcagcttgcgcgacgctggtcgctgaaattgctgaacgtcatgcgggt
cctgtcgtactgatcgcgccggacatgcaaaatgccctgcgactgcacgatgaaattcgt
cagtttaccgaccagatggtaatgaacctggcggactgggaaacgctgccctacgatagc
ttttcccctcatcaggagattatctcctcgcggctttccacgctgtatcaactccccgcg
atgcagcgcggtgtactgattgtgccagtgaacacgctgatgcagcgcgtctgtccgcac
agctatctgcatggtcatgcgctggtgatgaaaaaaggtcagcggctttcgcgcgacgcc
ctgcgcgaacaactggacagcgcgggctaccgccatgttgatcaggtgatggagcacggc
gaatacgccacgcgcggcgcgttgttggatctgttccccatgggcagcgaattaccttat
cgactggatttctttgatgacgaaatcgacagcctgcgtctgtttgataccgacacccag
cgcacactggaagaagtcgacgccattaatttgctgcccgcgcatgaattcccgaccgat
aaaacggcgattgagctgttccgcagccagtggcgcgatacctttgaagttaaacgcgac
gccgaacatatttaccagcaggtcagcaaaggcacgttacctgccgggatcgaatactgg
cagccattgtttttcagcgagccgctgccccccctgttcagctatttccccgccaatacg
ttattggtaaataccggcgatatagagaccagtgcggagcgcttccaggctgataccctg
tcgcgttttgagaaccggggtgttgatccgatgcgcccgcttctgccgccgcactcgctg
tggctgcgcgtagatgagctgttctccgaacttaaacgctggccccgtgttcaactgaaa
actgagactctggcgaacaaagccgcgaatactaacctcggcttccagaagttgccagat
atcgcggttcaggcgcagcaaaaagcgccgttagatgcgttacgtaaattccttgaaggc
ttcaccggtccggtgattttctccgttgaaagcgaaggtcgccgcgaagcgcttggcgaa
ctgctcgcccgtatcaaaatcgcgccgaagcgcatattgcgtctcgacgaagccgtcgac
aatggtcgctatctgatgattggcgcagccgaacacggcttcattgatagcaaacgcaac
ctggcgctgatttgcgaaagcgatctgctcggggagcgcgtggcgcgccgccgccaggat
tctcgtcgcaccatcaatcctgatacgttaattcgtaacctcgccgaactgcatcccggt
caaccggtggtgcacctggagcacggcgttggccgttatgccgggatgaccacgctggaa
gcgggcggtatcaccggcgagtacctgatgctcacctacgccaacgacgccaaactgtac
gtgcctgtgtcatcgttgcacctgatcagccgttacgctggcggcgcggaagaaaatgcg
ccgctacataaactgggtggcgatgcctggtctcgcgcccgtcagaaagccgctgagaag
gtacgcgatgtcgcggcagaactattggatatctatgctcagcgtgcggcgaaagagggc
tttgcctttaagcatgatcgtgagcagtaccaactgttttgcgacagtttcccgtttgaa
actacgcccgatcaggcgcaggcgatcaacgcggtgctcagcgatatgtgccagccgctg
gccatggatcgtctggtgtgcggcgacgtcggctttggtaaaaccgaagtcgcgatgcgc
gccgccttcctcgccgtagagaaccacaagcaggtggccgtgctggttccgactaccctg
ctcgctcagcagcacttcgacaacttccgtgatcgctttgccaactggccggtacgtatt
gaaatgctgtcccgtttccgtagcgccaaagagcaagcgcagattctggagcaggtggcc
gaagggaaaatcgatattctcatcggcacccacaaactgctgcaagcggacgtgaagcta
aaagatctgggtctgttgattgtcgatgaagagcaccgttttggcgttcgtcataaagag
cgcatcaaagcaatgcgcgcggatgtcgatatcctgacgctgacggcaacgcctattccg
cgtacgctcaatatggcgatgagcggcatgcgcgatctgtcgatcatcgccacgcctcct
gcccgtcgtctggcggtgaaaacctttgtgcgtgaatatgacaatctggtggttcgcgag
gctatcctgcgtgaagttctgcgcggggggcaagtttattatctgtttaacgacgtcgaa
aatatccagaaaaccgctgacagattagcggaactggtgccggaagcgcgtattggtatc
ggccatggtcaaatgcgcgagcgcgaactggaacgcgtgatgaacgatttccaccatcag
cgctttaacgttctggtatgtaccactattatcgaaaccgggatcgacatcccgaccgcc
aacaccattatcatcgaacgcgccgatcactttggtttggcgcaattacaccagttgcgc
ggccgtgtgggacgttcacaccatcaggcgtacgcctggctgctgacgccgcatccaaaa
gcgatgaccaccgacgcgcaaaagcgcctggaagccatcgcctcgctggaagatttgggc
gctggctttgcgctggcgacccacgaccttgaaattcgcggcgcgggggaactgctgggt
gaagatcagagtggttccatggaaagcatcggcttctcactgtatatggagctgctggaa
aatgctgtcgatgcgctcaaagagggacgcgaaccgtcgctggaagatctcaccagccag
caaaccgaagttgaactgcgcatgccgtcactgctgccggatgactatattcccgatgtc
aacacgcgactgtcgttctacaaacgtattgccagtgcgaaaggcgaaaacgagttggaa
gaaattaaggtcgagctgatagaccgttttggtctgctgcccgacccggcccgtacgttg
ctggatattgcccggttacgccaacaggcgcagaaactgggcatcagaaagcttgaaggc
aatgaaaaaggcggcacgattgagtttgcagagaaaaaccacgttaacccggtgtggctg
attggtttactgcaaaaacagccgcagcacttccgtctggacggtccaacccggctgaaa
tttatgcaggatctgagcgagcgtaaaacgcgaatcgactgggtacgccagtttatgcgc
caacttgaagaaaacgccgtagcatag
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