Citrobacter sp. XT1-2-2: M4I31_14230
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Entry
M4I31_14230 CDS
T09034
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cix
Citrobacter sp. XT1-2-2
Pathway
cix03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cix00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M4I31_14230 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cix03019
]
M4I31_14230 (rne)
03009 Ribosome biogenesis [BR:
cix03009
]
M4I31_14230 (rne)
Enzymes [BR:
cix01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
M4I31_14230 (rne)
Messenger RNA biogenesis [BR:
cix03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M4I31_14230 (rne)
Ribosome biogenesis [BR:
cix03009
]
Prokaryotic type
rRNA processing factors
M4I31_14230 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
UQX57601
LinkDB
All DBs
Position
2972974..2976201
Genome browser
AA seq
1075 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQNGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYLLPKLHEEAMELPSEQEYVERKQPEQPALATFAMPDVPPA
PTVQEPAVKAVAPKAAAATAATASQPGLISRFFSALKSIFGGNEEAKPVEQPAPKAEEKT
ERQQDRRKPRQNNRRDRNDRRDNRDNRGDRDNRNERAENGENRDDNRRNRRQAQQQNAEA
RDNRQQSSDVADKAKSGDEQQTPRRERNRRRNDDKRQAQQEVKELNLAEQQSQDTEQEER
VRQPQTRRKQRQLNQKVRYTDSTAVEAEVATTAAAAEVVVAQAVEQSVPTPRTELSKVDL
PAVVAPEQEDNSEARDSNGMPRRSRRSPRHLRVSGQRRRRYRDERYPAQSPMPLTFACAS
PELASGKVWISYPVVRPQDQQVEEQREQEIHQEQTASVAVEPQVAAAAVEHIADTPAPVE
AVQPEEVVAEPQIAVAETTHPEVIATPVEEQPQIIAESDAPVAEEIAAEAQPVAETPAEE
PAEIIVSKPEVVEEVAQAAPVVEEVAAPQEVVAAPVVEAEVVKSDVVATSVDAEHLHSHA
TAPMTRAPAPDYVPEAPRHSDWQRPPFAFEGKGAAGGHSATHQATAPATRPQPVE
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcgactcagcaggaagagttgcgtgtcgcccttgtagat
gggcaacgtctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagccaac
atctataaagggaaaattacccgtattgaaccgagtctggaagctgcttttgttgattac
ggcgctgaacgtcacggtttccttccgttaaaagaaattgcccgcgaatacttccccgct
aactacaactcccatggtcgtcccaacattaaagatgtgttgcgcgaaggtcaggaagtc
attgttcagatcgataaagaagaacgcggcaataaaggcgctgcgctgaccacctttatc
agcctggcgggtagttatctggttctgatgccgaacaacccgcgcgcgggcggcatctcc
cgtcgtattgaaggcgatgaccgcaccgaattaaaagaagcgctggcaagcctggaactg
cctgatggtatggggcttattgtgcgtaccgcaggtgtcggcaaatccgccgaagcgctg
caatgggacctgagcttccgcctgaaacactgggaagccattcaaaaagccgccgacagc
cgccctgctccgttcctgattcaccaggaaagcaacgtcatcgtccgcgcattccgtgac
tatttacgtcaggatattggcgaaatcctcattgataacccgaaagtcatggagatggcg
cgtcagcacatcgccgcgctgggtcgtccggatttcagcagcaaaatcaaactgtacacc
ggtgaaatcccgctgttcagccactatcaaattgaatctcagattgagtccgcgttccag
cgcgaagtgcgtctgccgtccggcggctccatcgtcatcgacagcactgaagcccttacc
gctatcgatatcaactccgcacgcgcgacccgcggcggcgacatcgaagaaaccgcattc
aacaccaacctggaagcagccgatgaaattgcgcgtcagctgcgtctgcgcgacctcggc
ggcctgattgtcatcgactttatcgatatgacgccggttcgccaccagcgtgcggttgaa
aaccgcctgcgtgaagccgtgcgtcaggaccgagcgcgtattcagatcagccatatttct
cgcttcggcctgctggagatgtcccgccagcgtctgagcccgtcgctgggtgagtccagc
catcacgtctgcccgcgctgctccggcaccggtaccgtacgtgataatgaatctctgtcg
ctgtctattctgcgtctgattgaagaagaagcgctgaaagagaatacccaggaagttcac
gctatcgttcctgtgccgattgcctcttatctgctcaacgaaaagcgtactgcggtcaac
gccatcgagacgcgtcagaatggcgtgcgctgtgtaatcgtgccaaacgatcaaatggaa
accccgcactattccgtgctgcgcgtccgcaaaggcgaagaaacgccaaccctgagctac
ttgctgccgaagctgcacgaagaagcaatggaactgccgtcagaacaagagtatgtcgag
cgtaaacagccagagcaaccggcactcgcgacctttgctatgccagacgtgccgccagca
ccaaccgtgcaagaacccgctgttaaagccgtagcgcctaaagctgctgctgccaccgca
gcaacagcctctcagcctggtttgattagccgtttcttcagcgcactgaagtctatcttc
ggcggtaacgaagaagcgaagccggttgaacaacctgcaccgaaagctgaagagaagacg
gaacgtcagcaggaccgccgtaaaccacgtcaaaataatcgtcgcgatcgtaacgatcgt
cgtgataaccgcgataaccgtggcgatcgtgacaaccgtaacgaacgtgcggaaaacggc
gaaaatcgcgatgacaatcgtcgtaaccgtcgtcaggcccagcagcaaaatgcggaagcg
cgcgataatcgccagcaatccagtgatgtcgctgacaaagcgaaatcaggtgatgagcag
cagaccccgcgtcgcgagcgcaaccgccgccgcaacgatgacaagcgtcaggcgcagcag
gaagttaaagagctgaacctggctgaacaacaatcgcaggataccgagcaggaagagcgc
gtacgtcagcctcagacccgtcgtaaacagcgtcagttgaaccagaaagtgcgttataca
gacagcacggcggttgaagccgaagtggcaactaccgctgcggcagctgaggtcgttgtc
gctcaagccgttgagcagtccgtaccgactccgcgtaccgaactgtcgaaagttgatctg
ccagccgttgtcgcacctgagcaggaagacaacagcgaagcgcgtgactccaacggtatg
ccacgtcgttcccgccgttcccctcgccatctgcgcgtaagtggacagcgtcgtcgtcgt
tatcgtgacgagcgttatccggctcagtcgccaatgccgctgaccttcgcctgtgcttct
cctgaattggcgtccggtaaagtatggatcagctaccctgtcgttcgtccgcaggatcag
caggttgaagaacaacgcgagcaggaaattcaccaggagcaaactgcctctgtcgcagta
gagcctcaggttgctgcggctgccgttgagcacattgcggacactcctgcgccggttgaa
gccgtgcagccagaggaagttgtagcggaacctcagattgccgttgctgaaaccacgcat
ccggaagtcattgcgaccccggttgaagaacaaccgcaaattatcgctgaatctgacgca
cctgtagctgaagagatcgccgctgaagctcaaccggtcgctgaaaccccggctgaagag
cctgcggaaatcatcgtctccaagccggaggtggttgaagaagtcgcgcaagcagcacct
gttgtggaagaagtcgctgcgccgcaggaagttgttgctgcgccggttgtagaagctgaa
gtcgttaagtctgacgttgtcgcaacaagcgttgacgccgagcaccttcacagccatgcg
actgcgccgatgacccgcgctcccgcgccggattatgtgccagaagcgccgcgtcatagc
gactggcagcgcccgccattcgcctttgaaggcaaaggcgccgccggtggacacagcgcc
acgcatcaagccactgcgccagcaacacgcccgcagccggttgaataa
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