Citrobacter sp. XT1-2-2: M4I31_19235
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Entry
M4I31_19235 CDS
T09034
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cix
Citrobacter sp. XT1-2-2
Pathway
cix03030
DNA replication
cix03430
Mismatch repair
cix03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M4I31_19235 (dnaE)
03430 Mismatch repair
M4I31_19235 (dnaE)
03440 Homologous recombination
M4I31_19235 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cix03032
]
M4I31_19235 (dnaE)
03400 DNA repair and recombination proteins [BR:
cix03400
]
M4I31_19235 (dnaE)
Enzymes [BR:
cix01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
M4I31_19235 (dnaE)
DNA replication proteins [BR:
cix03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
M4I31_19235 (dnaE)
DNA repair and recombination proteins [BR:
cix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
M4I31_19235 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UQX58519
LinkDB
All DBs
Position
complement(4028676..4032158)
Genome browser
AA seq
1160 aa
AA seq
DB search
MSEPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA
GIKPIVGADFHVRSELLGDELTQLTVLAANNTGYQNLTLLISKAYQRGYGAEGPVIDRDW
LVELKEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEAHFPNSYFLELIRTGRQDEEN
YLHAAVELAERRGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRNYSAQQYM
RSEDEMCELFSDIPEALQNTVEIAKRCNVTVRLGEYFLPQFPTGDMTTEDFLVAKSKEGL
EQRLEFLFPDPEERARRRPEYDERLDVELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPEEM
AKQRGTFEEGAKKRGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNEGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLNDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYANCTPWPEQVVLDGERETLGLY
LTGHPINQYLKEIERYVGGHRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMMAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD
RLLNDLRGLIGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaccacgtttcgtccacctccgggtgcacagcgactactccatgatcgatggg
ctggcgaaaaccgggccgctggtgaagaaggcggccgcgttaggcatgcctgcgctggcg
atcaccgattttaccaacctgtgtggtctggtgaagttttacggagcgggtcacggcgcc
ggtattaagcctattgtaggcgcagattttcatgtccgcagtgaactattgggtgatgaa
ctcacgcaactcaccgtactggccgctaacaataccggctatcagaacctgacgttattg
atatcaaaagcctatcagcgcggttatggcgcagaagggccggttatcgaccgcgactgg
ctggtcgagctaaaagaaggtttgattttgctctccggcggccgcatgggcgacgtcgga
cgtagcttgttgcgcggtaatagcgccctggttgacgaatgcgtggcgttttacgaagcg
cattttcccaatagctacttccttgagctgatccgtaccggcagacaagatgaagaaaat
tatctgcatgccgcggtagaactggctgaaaggcgtggtttgccggtggtggcgaccaac
gatgttcgcttcctggaaaccggcgatttcgacgcgcatgaaatccgtgtggcgatccac
gacgggttcacccttgacgaccctaaacgcccgcgtaactactccgcgcagcagtatatg
cgtagcgaagacgagatgtgcgagctgttctccgatatcccggaggcgctgcaaaacacc
gtcgaaattgccaaacgctgtaacgtcacggtgcgtttgggtgagtatttcttgccacag
ttcccgaccggcgatatgaccaccgaggatttcctcgtggcgaagtcgaaagaggggctg
gaacagcgactggagttcctgttcccggatccggaagagcgcgccaggcgccgtccggaa
tatgatgaacgtctggatgttgagctacaggttatcaaccagatggggttcccgggctac
ttcctgatcgttatggaatttatccagtggtcgaaggataacggcgtaccagtaggtccg
ggacgtggttccggcgcaggctcgctggtggcctatgcgctaaaaattaccgacctggat
ccgctggaatttgacctgctgttcgaacgtttcctgaacccggaacgtgtctcaatgccc
gacttcgacgttgacttctgtatggagaaacgcgaccaggttattgaacacgtggcggat
atgtacggtcgtgatgcggtttcgcagattattactttcggtacgatggcggcaaaagcg
gttatccgagacgtgggccgcgtgctggggcacccgtacggcttcgtggatcgtatttcg
aaactggtgccgcccgatccgggcatgacgctggcgaaagccttcgaagctgaaccgcaa
ctgccggaaatctatgaggcagatgaagaggttaaagcgctgatcgatatggcgcgtaag
ctggaaggcgtcacgcgtaacgccggcaagcacgccggtggcgtggttatcgctccgacc
aaaattaccgattttgcgccgctatactgcgatgaacaggggctgcacccggttactcag
tttgataagaacgacgtggaatacgccggcctggtgaagttcgacttcctggggctgcgt
acgctgaccatcatcaactgggcgctggagatgatcaacgcccgccgtgaaaagaacggc
gagccgccgctcgatatcgcggccattccgcttgacgataagaaaagcttcgacatgctg
caacgctcggaaaccaccgcggtattccagcttgaatcccgcggcatgaaggatctgatc
aaacgtctgcagcctgactgcttcgaagatatgatcgcactggtggccttgttccgcccg
ggcccgctacagtcggggatggtagataactttatcgaccgtaagcatggtcgtgaagag
atttcctatccggacgtacaatggcagcatgagtgtctgaagccggtactggagccaacc
tacggcattatcctgtatcaggaacaggttatgcagattgcccaggagctgtctggttac
acgcttggcggcgcggatatgctgcgtcgtgcgatgggtaagaaaaagccggaagaaatg
gccaaacagcgcggcacctttgaagaaggggcgaaaaagcgcggcgtcgacggcgaactg
gcgatgaaaatctttgacctggtggagaaattcgccggttacggatttaacaaatcacac
tccgctgcctatgcgctggtctcttaccagacgctatggttgaaggcgcattacccggcc
gagtttatggcggcggtaatgacggccgatatggataacaccgagaaagtggtcgggctg
gtggatgaatgctggcgcatggggttaaaaatcctgccgccagacattaactccgggctt
taccatttccacgttaacgatgatggcgagattgtttatggcatcggcgcgataaaaggc
gtgggtgaagggccaattgaagctattattgaggcgcgcaacgaaggcggttacttccgc
gagctgtttgatctctgtgcgcgtacggatatcaaaaaactcaatcgccgggtgctggaa
aaactgattatgtccggggcgtttgaccgccttggcccacaccgcgcggcgttgatgaat
tcgttgaatgatgcgctaaaagccgccgatcagcatgcgaaagccgaggctattggccag
gctgatatgtttggcgtgctggcggaagaacccgaacaaattgaacagtcttatgccaac
tgtacaccgtggcctgagcaggtagtattagacggtgagcgtgaaacgttagggctttac
ctgacgggacaccctatcaaccagtatttaaaagaaattgagcgctatgttggaggccac
aggctgaaagacatgcatccgacagaacgtggtaaagtcaccacggctgcggggctcgtc
attgccgcgcgggtaatggtcaccaagcgcggcaatcgtatcggcatctgtacactggat
gaccgttccgggcgtctggaagttatgttgtttaccgatgccctggataaataccagcaa
ttgctggaaaaagaccgcatacttatcgtcagcggacaggtcagctttgatgacttcagc
ggcgggcttaaaatgatggcccgtgaagtcatggatattgacgaagcccgggaaaaatat
gctcgcgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttaaaccga
ctccgtcagtctctggaaccccaccgctcggggacaattccagtacatctctactatcag
agggcggatgcacgtgcgcggttgcgttttggcgcgacgtggcgtgtctctccgagcgat
cgtttgctaaacgatctccgcggccttattggttcggagcaggtggaactggagtttgac
taa
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