Citrobacter sp. XT1-2-2: M4I31_21400
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Entry
M4I31_21400 CDS
T09034
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cix
Citrobacter sp. XT1-2-2
Pathway
cix03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cix00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M4I31_21400 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cix03019
]
M4I31_21400 (rnr)
03016 Transfer RNA biogenesis [BR:
cix03016
]
M4I31_21400 (rnr)
Enzymes [BR:
cix01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
M4I31_21400 (rnr)
Messenger RNA biogenesis [BR:
cix03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M4I31_21400 (rnr)
Transfer RNA biogenesis [BR:
cix03016
]
Prokaryotic type
tRNA degradation factors
M4I31_21400 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
MetOD2
Motif
Other DBs
NCBI-ProteinID:
UQX58924
LinkDB
All DBs
Position
complement(4500393..4502855)
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AA seq
820 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPANRDELAAELNIEGEEQQEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTSMAVDMALRTHEIPYIWPQA
VEKQVAGLKEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDQEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
SKGRLTGFKFYEAVMSSHARLTYTKVWHMLQGDQELREQYAPLVKHIEELHNLYKVLDKA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMIMANISAARFVEKAKEP
ALFRIHDKPTTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESIADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAQEQGHKGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLTGESSGQMYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNEGKTAREKAKKGDAGKTTGKRRQMGKKVNFEPDSAFRGEKKGKAKPQ
ADKKTAEKKGDKKAKKPSAKTRKIAAATKAKRAAKKNVAQ
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagctgaaaaatacgcgaaccctatcccgagc
cgggaatttatcctcgaacatttaactaaacgtgaaaaaccggccaaccgcgatgagttg
gccgctgaactcaacattgaaggtgaagaacagcaagaagcgctgcgtcgtcgcctgcgc
gcgatggagcgtgacgggcaactggtcttcactcgtcgtcagtgctacgcgctgccggaa
cgtctcgacctgctgaaaggtaccgttattggccaccgtgatggctacggctttctgcgc
gttgaaggccgcaaagatgacctgtacctgtccagcgagcagatgaaaacctgcattcat
ggcgatcaggtgctggcgcagccgctgggcgcggaccgtaaaggtcgtcgcgaagcgcgt
attgtgcgcgtactggtgccgaaaaccagccagattgttggccgctactttaccgacgct
ggggtcgggtttgtcgtcccggacgatagccgcctgagtttcgatatccttattccgccg
gaagaggtgatgggggcgcgtatgggctttgtggtcgtggttgagctgacccagcgtcca
acccgtcgcaccaaagctgtgggtaaaatcgttgaagtattgggcgacaacatgggcacc
agcatggctgttgatatggccctgcgtacccatgaaatcccgtatatctggccgcaggca
gtcgaaaaacaggttgccgggctgaaagaagaagtgccggaagaggcgaaagtcgggcgt
gtcgatctacgcgatctcccgctggtcactattgatggcgaagatgcgcgtgacttcgac
gatgcggtttactgcgagaagaaacgcggcggcggctggcgtttatgggtggcgattgct
gacgtaagctattacgtccgcccgccgactccgttggatcaggaagcgcgcagccgtggc
acgtctgtctacttcccgtcgcaggttgtcccgatgctgccggaagtgctgtctaacgga
ttgtgttcgctgaacccgcaggtagaccgtctgtgtatggtgtgcgaaatgaccatttcg
tcgaaaggtcggttaaccggctttaaattctacgaagcggtaatgagttcccatgcgcgt
ctgacctacaccaaagtctggcacatgctgcagggcgatcaggaactgcgcgagcagtat
gcgccgttagtgaaacatattgaagagctgcataatctctacaaagtgctggataaagcc
cgggaagaacgcggcggtatctcgtttgaaagtgaagaagcgaagtttattttcaacgct
gaacgtcgtattgaacgtatcgaacagacgcaacgtaacgacgcgcacaagctgattgaa
gagtgcatgatcatggcaaacatctcagcggcgcgattcgttgagaaagccaaagagcca
gcattgttccgtattcacgataagccgacgaccgaagcgattacctccttccgttccgta
ctggccgaactgggcctggaactgcctggcggcaataaacccgagccgcgcgattacgct
gaattgctggagtcgattgccgaccgtcctgacgcggaaatgctgcaaactatgctgctg
cgctcgatgaagcaggcgatttacgatccagaaaaccggggtcactttggtctggcgctg
caatcttatgcgcactttacctcgccgattcgtcgttacccggatctctctttgcaccgt
gcaattaaatatttgctggcgcaggagcagggccataaaggcaacaccacggaaaccggt
ggctatcattattcaatggaagagatgctgcaacttggccagcactgttcgatggccgaa
cgccgtgctgacgaagctacgcgcgacgtctctgactggctgaagtgtgacttcatgctg
gatcaggtgggtaacgtctttaaaggcgtaattgccagcgtgaccgggtttggcttcttt
gtccgtcttgacgaactgtttatcgacggtctggtgcatgtctcctccctggataacgac
tactatcgctttgaccaggttgggcagcgcctgacgggtgagtcaagcggtcagatgtat
cgcctgggcgatcgcgtggaagttcgcgtggaagcggtcaacatggacgagcgtaaaatc
gatttcagtttgatctccagcgaacgtgcgccgcgcaatgagggcaaaaccgcacgcgaa
aaagctaaaaaaggcgatgcaggtaaaactaccggtaaacgtcgtcaaatgggcaaaaag
gtgaatttcgagccggacagcgcattccgtggcgagaagaaaggcaaagccaaacctcag
gcggataaaaaaacggctgagaagaaaggcgataaaaaagcgaaaaagccatcggcaaaa
acgcgtaaaatcgctgccgccaccaaagctaaacgtgcggcgaaaaagaacgtcgcacaa
taa
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