Citrobacter sp. XT1-2-2: M4I31_22430
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Entry
M4I31_22430 CDS
T09034
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cix
Citrobacter sp. XT1-2-2
Pathway
cix03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cix00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M4I31_22430 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cix03021
]
M4I31_22430 (rpoB)
03400 DNA repair and recombination proteins [BR:
cix03400
]
M4I31_22430 (rpoB)
Enzymes [BR:
cix01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M4I31_22430 (rpoB)
Transcription machinery [BR:
cix03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M4I31_22430 (rpoB)
DNA repair and recombination proteins [BR:
cix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M4I31_22430 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
UQX59109
LinkDB
All DBs
Position
complement(4723434..4727462)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRDNKLQME
LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEYIAGKVAAKD
YVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIYAVLVSGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGSDVRQKVDLNTFSDEEVLRLAENLKKGMPIATPVFDGAKESEIKELLQ
LGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccgcaa
gtgttggacataccttatctcctttctatccagcttgactcgtttcagaagttcatcgag
caagatcctgaagggcagtatggtctggaagcagctttccgttccgttttcccgattcag
agctacagcggtaattccgagctgcaatacgtcagctaccgtcttggcgaaccggtgttt
gacgttcaggaatgtcagatccgtggcgtgacctattccgcaccgctgcgcgtaaaactg
cgtctggtgatctacgagcgcgaagcgccggaaggcaccgtaaaagacattaaagaacaa
gaagtctacatgggcgaaattccgctcatgaccgacaacggtacctttgttatcaacggt
actgagcgtgttatcgtttctcagctgcaccgtagtcctggcgtcttctttgactccgac
aaaggtaaaacccactcttcgggtaaagtgctgtataacgcgcgtattattccttaccgt
ggttcctggctggacttcgaattcgatccgaaggacaacctgttcgtacgtattgaccgt
cgccgtaaactgcctgcgaccatcattctgcgtgcgctgaactacaccactgagcagatc
cttgacctgttctttgaaaaagttgttttcgaaattcgtgacaacaagctgcagatggaa
ctggtgccggaacgcctgcgtggtgaaaccgcctcctttgacatcgaagctaacggcaaa
gtctacgtcgaaaaaggccgtcgcatcactgcgcgccatattcgccagctggaaaaagac
gatatcaagcatatcgaagttccggttgaatacattgctggtaaggttgcggctaaagac
tacgttgacgaatctactggcgagctgatctgcgcagctaacatggagctgagcctggat
ctgctggctaagctgagccagtctggtcacaagcgtatcgaaacgctgttcactaacgat
ctggaccacggtccgtacatttctgaaactgtacgcgtcgacccaaccaacgatcgtctg
agcgcgctggtagaaatctaccgcatgatgcgccctggtgagccgccgactcgtgaagct
gcggaaagtctgttcgagaacctgttcttctccgaagaccgctatgacctgtctgcggtt
ggtcgtatgaagttcaaccgttctctgctgcgcgacgaaatcgaaggttccggtatcctg
agcaaagacgacatcattgaagtgatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtcgatgatatcgaccaccttggcaaccgtcgtatccgttccgtaggcgaaatggcg
gaaaaccaattccgcgttggcctggtgcgtgttgagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgcctcaggatatgatcaacgccaagccgatttctgca
gcagtgaaagagttctttggttccagccagctgtctcagtttatggaccagaacaacccg
ctgtctgagattacgcacaaacgtcgtatctccgcactcggcccaggcggtttgacccgt
gaacgcgcaggcttcgaagttcgagacgtacacccgactcactacggtcgcgtatgtcca
atcgaaacgcctgaaggtccgaacatcggtctgatcaactcactgtccgtgtatgcacag
actaacgaatacggcttccttgagactccgtaccgtaaagtgaccgacggtgttgtaacc
gatgaaattcactacctgtctgctatcgaagaaggtaactacgttatcgctcaggcgaac
tccaacctggatgacgaaggccactttgtagaagatctggttacttgccgtagcaaaggc
gaatccagcttgttcagccgcgaccaggttgactacatggacgtatccacccagcaggtg
gtatccgtcggtgcgtccctgatcccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttccgactctgcgtgctgataagccgctggtt
ggtaccggtatggaacgtgctgttgccgttgactccggtgttactgcagttgctaaacgt
ggcggtactgttcagtacgtggatgcttcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggcgaagcaggtatcgacatttataacctgactaaatacacccgttctaac
cagaacacctgtatcaaccagatgccttgcgtatctctgggcgagccggttgaacgtggt
gatgtgctggcagacggtccgtccaccgaccttggtgaactggcgctgggtcagaacatg
cgcgtggcattcatgccatggaatggttacaacttcgaagactccatcctcgtatccgag
cgtgttgtccaggaagaccgtttcaccaccatccacattcaggaactggcatgtgtgtcc
cgtgacaccaagctggggccggaagagatcaccgctgacatcccgaacgtgggtgaagct
gcgctctctaaactggatgaatccggtatcgtttatatcggtgcggaagtgaccggtggc
gatattctggttggtaaggtaacgccgaaaggtgaaacccaactgacgccggaagagaaa
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgcgtg
ccaaacggtgtttccggtacgattatcgacgttcaggtctttactcgcgatggcgtagaa
aaagacaaacgtgcgctggaaatcgaagagatgcagctgaagcaggctaagaaagacctg
tctgaagaactgcagatcctcgaagcgggtctgttcagccgtatctacgctgtgctggtt
tccggtggtgttgaagctgagaagctcgacaaactgccgcgtgaccgctggttagaactc
ggcctgaccgacgaagagaaacagaatcagctggaacaactggctgagcagtacgacgaa
ctgaaacacgaattcgagaaaaaactcgaagcgaaacgccgtaaaatcactcagggcgac
gatctggcaccgggcgtgctgaagattgttaaggtttatctggcggttaaacgtcggatc
caacctggtgataagatggcaggtcgtcacggtaacaagggtgtaatctctaagatcaac
ccgatcgaagatatgccacacgatgctaacggtacgccggtagatatcgtactgaacccg
ctgggcgtaccatcgcgtatgaacatcggtcagatccttgaaacccacctgggtatggct
gcgaaaggtatcggcgataagatcaacgccatgctgaaacagcaacaggaagtcgccaaa
ctgcgcgagttcatccagcgtgcttacgatctgggttcagatgttcgtcagaaagttgac
ctgaataccttcagcgatgaagaagttctgcgtctggctgaaaacctgaaaaaaggtatg
ccgatcgcaacgccggtcttcgacggtgcgaaagagtctgaaatcaaggaactgttacag
ctgggtggcctgccgacttccggtcagattaccctgttcgacggtcgtaccggtgagcag
ttcgagcgccaggttaccgttggctacatgtatatgctgaaactgaaccacctggttgat
gacaagatgcacgcgcgttctaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggctcagttcggtggtcagcgcttcggggagatggaagtgtgggcgctggaagca
tatggcgcggcatacaccctgcaggaaatgctcaccgttaagtctgatgacgtgaacggt
cgtactaagatgtataaaaacatcgtggacggcaaccatcagatggaaccaggcatgccg
gaatccttcaacgtactgttgaaagagattcgttcgctgggtatcaacatcgagctggaa
gacgagtaa
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