Citrobacter sp. Y3: HAP28_02790
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Entry
HAP28_02790 CDS
T10856
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ciy Citrobacter sp. Y3
Pathway
ciy02020
Two-component system
ciy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ciy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HAP28_02790 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HAP28_02790 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ciy03021
]
HAP28_02790 (rpoN)
Transcription machinery [BR:
ciy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HAP28_02790 (rpoN)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
QIO38040
LinkDB
All DBs
Position
complement(582519..583952)
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AA seq
477 aa
AA seq
DB search
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQTDLHDEVDTRE
TQDSETLDTADALEQKEMPEELPLDASWDEIYTAGTPSGTSGDYIDDELPVYQGETTQTL
QDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVSLDDILDSMGNDEVGLDEVEAVLK
RIQRFDPVGVAAKDLRDCLLIQLSQFDKSTPFLEEARLIISDHLDLLANHDFRTLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGHWTVELNGDSIPRLQIN
QHYAAMCNGGRNDADSQYIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEE
FMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAI
RALVKKLIAAENPAKPLSDSKLTSMLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtttgcaactcaggctgagccaacaactggcgatgacgccgcagctacaa
caggcgattcgtctgttgcagttgtccacgctggaactgcagcaggaactccagcaagcg
ctggaaagcaatccgttgctggaacaaaccgatcttcacgacgaagttgatacccgcgaa
actcaggacagcgaaacgctggataccgccgacgcgctcgaacaaaaagagatgccggaa
gagttgccgcttgacgccagctgggatgaaatctacaccgccggaacgccgtcgggcacc
agcggcgactacattgacgatgagctccccgtttaccagggtgaaaccacgcagactcta
caggattacctgatgtggcaggtggaactcaccccgttctccgataccgaccgcgcaatc
gccacgtcgattgtagatgccgttgacgataccggttatctcaccgtttcgctggacgac
atcctcgacagcatgggcaatgatgaggtcggccttgatgaagtcgaagccgtactcaaa
cgtattcagcggtttgatcccgtaggcgtggcggcaaaagatctgcgcgattgcttactg
atccagctctcgcaattcgacaaatcgacccccttccttgaagaagcccggttgatcatc
agcgatcatctcgatctgctggcgaaccacgacttccgcactctgatgcgcgtcactcgt
ctcaaagaagaggtgctcaaagaggcggtcaatctgattcagtcactcgatccccgaccc
gggcagtcgatccagaccggcgaaccggaatacgtgatcccggatgtgctggtacgcaag
cataacggtcactggacggttgagctcaacggtgacagcattccccgcttgcagatcaat
cagcactacgccgccatgtgcaacggtgggcgtaatgacgccgacagccagtacatccgc
agtaatttgcaggatgcgaagtggttgattaagagtctggaaagccgcaatgataccctg
ctgcgcgtcagccgttgcatcgttgagcagcagcaagccttctttgagcaaggcgaagaa
tttatgaaaccgatggtgctggctgacatcgcccaggccgtcgagatgcacgaatcgacc
atttctcgtgtgacgacgcagaagtatctgcacagtccacgcggcatttttgaactgaag
tattttttctccagccatgtgaataccgaggggggtggcgaagcgtcctccacggcgatc
cgcgcactggtgaagaagttgattgcggcggaaaaccccgcgaagcctttgagcgacagc
aagctaacatcgatgctgtcggaacaaggcatcatggtggcgcgccgcaccgttgcgaag
taccgagagtctttatccattccgccgtcaaaccagcgcaaacaactggtttga
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