Citrobacter sp. Y3: HAP28_02990
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Entry
HAP28_02990 CDS
T10856
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ciy Citrobacter sp. Y3
Pathway
ciy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ciy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HAP28_02990 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciy03019
]
HAP28_02990 (pnp)
03016 Transfer RNA biogenesis [BR:
ciy03016
]
HAP28_02990 (pnp)
Enzymes [BR:
ciy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HAP28_02990 (pnp)
Messenger RNA biogenesis [BR:
ciy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HAP28_02990 (pnp)
Transfer RNA biogenesis [BR:
ciy03016
]
Prokaryotic type
tRNA degradation factors
HAP28_02990 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
aRib
OB_RRP5_4th
KH_2
S1_RRP5
KH-I_KHDC4-BBP
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
QIO38076
LinkDB
All DBs
Position
620456..622591
Genome browser
AA seq
711 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA
GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIKEINELVKEAGKPRWDWQPEAVNE
ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLVAEDESLDANELGEILHAI
EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTR
DAQSLDELMGERTDNFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPDLDK
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD
ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA
INAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPEAPVSEQGE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
ttgcttaatccgatcgttcgtaaattccagtacggtcagcataccgttacgctggaaacc
ggcatgatggcccgtcaggccactgccgctgttatggttagcatggatgacacggcggta
ttcgtgaccgttgtcggccagaaaaaagcgaagccgggtcaggacttcttcccgctgacc
gttaactatcaggagcgtacctacgctgctggccgcatcccaggtagcttcttccgtcgt
gaaggccgtccaagcgaaggcgaaactctgatcgcgcgtctgattgaccgcccggttcgt
ccgctgttcccggaaggtttcgtgaacgaagttcaggttatcgcaaccgtcgtttccgtt
aacccgcaggttaacccggatatcgtcgcgatgatcggtgcctctgctgcactgtctctg
tctggtattccgttcaacggcccaatcggtgcggcacgtgtgggttatatcaatgaccag
tacgtactgaacccgactcaggacgagctgaaagagagcaaactggatctggtcgttgcc
ggtacggaagccgccgtactgatggttgaatccgaagcagaactgctgagtgaagaccag
atgctgggtgctgtcgtgtttggtcacgaacagcagcaggtggttatcaaagaaatcaac
gaactggtgaaagaagccggtaaaccacgttgggactggcagccggaagcggtgaacgaa
gcgctgaacgcgcgcgttgcagccctggcagaatctcgcctgagcgacgcttaccgtatc
accgacaaacaagagcgttatgctcaggttgacgtgatcaagtctgaaaccatcgcaacg
ctggttgcagaagatgagtccctggacgctaacgaactgggtgaaatcctgcacgcaatc
gagaaaaacgtggtgcgtagccgtgtactggccggcgaaccgcgtattgatggccgcgaa
aaagacatgatccgtggtctggacgtgcgtactggcgtactgccacgtacccacggttcc
gcactgttcacccgtggcgaaactcaggcgctggttaccgcaaccctgggtaccacccgt
gatgcgcagagcctcgacgaactgatgggcgagcgtactgacaacttcctgttccactac
aacttccctccgtactgcgtcggcgaaaccggcatggtcggttctccgaagcgtcgtgaa
attggtcacggtcgtctggcgaagcgcggcgtgctggcagtgatgccggatctggataaa
ttcccgtacaccgtgcgtgtggtttctgaaatcaccgaatccaacggttcttcttccatg
gcttccgtgtgtggtgcctctctggcgctgatggacgcaggcgtgccgatcaaagcggcc
gttgcgggtatcgcgatgggtctggtgaaagaaggcgacaactacgttgttctgtctgac
atcctgggcgacgaagatcacctgggcgatatggacttcaaagttgcgggctcccgcgac
ggtatctctgcgctgcagatggatatcaaaattgaaggtatcaccaaagagatcatgcag
gttgctctgaaccaggctaaaggtgcgcgtctgcatatcctgggcgtgatggaacaggcg
attaacgcgccacgcggcgacatttctcagtttgcaccgcgtatccacaccattaagatc
agcccggacaaaatcaaagatgtgatcggtaaaggcggttctgtgatccgtgcgctgacc
gaagagactggcaccaccatcgaaatcgaagatgacggtaccgtgaaaatcgcagcaacc
gacggtgaaaaagcgaaatacgcaattcgccgtatcgaagagatcaccgcagaaatcgaa
gtgggccgtatctacaacggtaaagtgacccgtatcgttgactttggtgcgttcgttgcc
atcggcggcggtaaagaaggcctggtacacatctcgcagatcgcagataagcgcgttgag
aaagtgaccgattacctgcagatgggccaggaagtaccggttaaagttctggaagttgac
cgccagggccgtgtacgtctgagcattaaagaagcaactgaacaatctcagcctgccgcc
gcaccggaagctccggtaagcgaacagggcgagtaa
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