Citrobacter sp. Y3: HAP28_03725
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Entry
HAP28_03725 CDS
T10856
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ciy Citrobacter sp. Y3
Pathway
ciy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ciy00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HAP28_03725 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ciy03021
]
HAP28_03725 (rpoD)
Transcription machinery [BR:
ciy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HAP28_03725 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID:
QIO38204
LinkDB
All DBs
Position
complement(763828..765672)
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AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTA
THVGSELSQEDLDDDEDEDEEEDDDSSDDDNSIDPELAREKFGELRTQYEVTRDTIKAKG
RSHADAQAEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPK
KNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVADDVHRGLQKLQQIEEETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES
LRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagcttcttgtcacccgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattcagatcag
attgaagatatcatccaaatgatcaacgacatgggtattcaggtgatggaagaagcaccg
gatgccgatgatctgctacttgctgaaaacaccaccagtaccgacgaagacgcggaagaa
gcggccgcgcaagttctgtccagcgtagagtctgaaatcggtcgtaccactgacccggtt
cgcatgtatatgcgtgaaatgggtaccgttgaactgttgacccgcgaaggcgaaatcgat
attgcgaaacgcatcgaagacgggatcaaccaggttcagtgctccgttgccgaatatcca
gaagccattacctatctgcttgagcagtacgatcgtgttgaggctgaagaagcccgtctg
tccgacctgatcaccggttttgtcgatccgaacgcggaagaagatttggcgccgaccgcc
actcacgtcggctctgagttgtctcaggaagacctggatgacgacgaggacgaagacgag
gaagaagacgacgacagcagtgatgacgacaacagcatcgaccctgagctggcgcgcgag
aagttcggtgaactgcgtacgcagtacgaagtcacgcgtgacaccatcaaagcgaaaggt
cgtagccacgccgatgctcaggccgagatcctgaagctgtctgaagtgttcaagcagttc
cgtctggtgccgaagcagttcgactacctggtgaacagcatgcgcgtcatgatggacagg
gttcgtacccaggaacgtctgatcatgaagctctgcgttgagcagtgcaaaatgccgaag
aagaacttcatcaccctgttcaccggcaacgaaaccagtgaaacctggttcaacgcggct
atcgcgatgaacaaaccgtggtccgaaaaactgcacgatgtggccgatgacgttcaccgt
ggcctgcagaaactgcaacagattgaagaagagaccggcctgactatcgagcaggtcaaa
gacatcaaccgtcgtatgtccatcggcgaagcgaaagcgcgtcgtgcgaagaaagagatg
gttgaagccaacttacgtctggttatctctatcgccaagaaatacaccaaccgtggtctg
cagttcctggatctgattcaggaaggcaacatcggtctgatgaaagcggtcgataagttc
gaataccgtcgtggttacaagttctccacctacgcaacctggtggatccgtcaggcgatc
acccgctctatcgcggatcaggcgcgcaccatccgtattccggtgcatatgattgagaca
atcaacaaactcaaccgtatctctcgccagatgctgcaagagatgggtcgcgagccgacg
ccggaagagctggccgagcgcatgctgatgccggaagacaagatccgtaaagtgctgaag
atcgctaaagagccgatctccatggaaaccccgatcggtgacgatgaagattcgcatctg
ggtgatttcatcgaggatactaccctcgagctgccgctggattctgcgaccaccgaaagc
ctgcgtgcagcaacacacgacgtactggccggtttgaccgcgcgtgaagcgaaagtcctg
cgtatgcgtttcggtatcgatatgaacaccgaccacacgctggaagaagtaggtaaacag
ttcgacgtgacccgcgaacgtatccgtcagatcgaagcgaaggcactgcgtaaactgcgt
cacccgagccgttctgaagtcctgcgtagcttcctggacgattaa
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