Citrobacter sp. Y3: HAP28_05715
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Entry
HAP28_05715 CDS
T10856
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ciy Citrobacter sp. Y3
Brite
KEGG Orthology (KO) [BR:
ciy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciy03019
]
HAP28_05715 (hrpB)
Enzymes [BR:
ciy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HAP28_05715 (hrpB)
Messenger RNA biogenesis [BR:
ciy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HAP28_05715 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
HA2_N
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QIO38570
LinkDB
All DBs
Position
1187757..1190186
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AA seq
809 aa
AA seq
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MTSLPVAAVLPELLTALDSAPQVLLSAPTGAGKSTWLPLQFLAHKGFEGRIILLEPRRLA
ARNVAQRLAELLNEKPGETVGYRMRSQSCVGPATRLEVVTEGVLTRMIQRDPELSGVGLV
ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQCLPDAPVIVSEGRA
FPVERRYQPLASQLRFDEAVAVACAELLRKEPGSLLLFLPGVGEILRVQEQLSTRVGSDV
LLCPLYGALSLNDQRKAILPAPDGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDA
RTGLTRLITQRISQASMTQRAGRAGRLEPGICLHLLAKEQAERAAAQGDPEMLHSDLSGL
LMELLQWGCRDPAQLTWLDLPPAVNVQAAKRLLHMLGALDGEQLSAIGQKMAALGNDPRL
AAMLVSAATPDDAATAAKLAAILEEPPRMGNTDLGVAFSRHQPAWQQRSQQLLKRLNVRN
GEADASRIAPLLAQAFADRIARRRSQDGRYQLANGMGAALDVDDALGRHEWLIAPLLLQG
SASPDARILLALPLDIDALISRCPELLQQSDTIEWDEAQGTLKAWRRMRIGELTVKVQPL
AKPSEDELHLAMLNGIRDKGLNVLNWTPAAEQLRLRLHCAAKWLPEYDWPAVDDRTLLAT
LENWLLPHMSGVHSLRGLKSLDVHQALSGLLDYSLQQRLVSSLPTHYTVPTGSRIAIRYH
EDNPPALAVRMQEMFGEAKTPTIAEGRVPLVLELLSPAQRPLQITQDLAAFWQGSYRDVQ
KEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
gtgacgtcgttacctgttgccgctgtactgcctgaattgcttaccgctctggattctgcg
ccgcaggttctgctgagcgcgccgacgggtgccggtaagtcaacctggttaccgctacag
tttctggcacataaagggttcgaagggcggattatcctgctggaaccgcgtcgtctggcg
gcacgaaacgtggcgcaaaggcttgcggaactgctcaatgaaaagcccggtgagacggtc
ggttaccggatgcgatcgcaatcctgcgtcgggccagcaacacggcttgaggtggttacc
gaaggggttctgacgcgtatgatccagcgtgacccggaactcagtggcgttgggctggtg
atcctcgatgaatttcacgaacgcagtttgcaggcggatctcgcactggcgctgctgctg
gatgtgcagcaagggctgcgcgacgatctcaaactgttgattatgtccgccacgctggat
aacgatcgcctgcaacagtgcctgccggatgcgccggtgatcgtttccgaagggcgcgcc
tttcccgttgagcggcgttatcaaccgctggcgtcgcaattgcgtttcgacgaagccgtg
gcggtcgcctgcgccgagctgctgcgcaaagagcccggctcgctgctgctgtttttaccc
ggtgtcggggagatcctgcgcgtacaggagcaattaagtacgcgagtcggcagcgatgtg
ctgctgtgtccgctgtatggcgcgctgtcgctcaacgatcagcgcaaagcgattttgccg
gccccggacgggatgcgcaaagttgtgttggcaaccaatattgcggaaaccagtctgacc
attgaggggattcgactggtggtggattgcgcgcaggagcgggtggcgcggtttgatgcg
cgaaccgggttgacccggcttatcactcagcgcattagccaggcctcaatgacccagcgc
gccgggcgtgccgggcgtctggagccggggatttgtctgcatctgctggcgaaagagcag
gcggaacgcgcggcagcacagggggatcctgagatgttgcacagcgatctctccggtttg
ctgatggagttgttgcagtggggatgtcgcgatcctgcgcaactcacctggctggatctg
ccacccgccgtcaacgtacaggcggcgaaacgattactgcacatgctgggcgcgctggat
ggcgagcagctcagtgcgatagggcaaaaaatggcggcgttgggtaacgatccgcgcctg
gccgcgatgctagtcagtgctgccacgcccgacgatgcagctacggcagcaaagctggca
gccattcttgaggagccgccgcggatgggcaataccgatctgggcgtggcgttttcccgc
catcagcctgcctggcagcagcgcagtcagcaacttctcaaacgtctgaatgttcgtaac
ggcgaagcggatgcgtcgcgcatcgccccactactggcccaggcctttgccgatcgcatc
gcgcgtcgacgcagccaggacgggcgttatcaactggcgaacggcatgggcgcggcgctg
gatgtcgatgatgcgctggggcggcacgaatggttgattgcgcctctgttgctgcagggg
agcgcgtcgccggatgcgcggatcctgctggcgctgccgctcgatatcgacgcgcttatc
tcgcgttgtcctgaactgctacagcagtctgataccattgagtgggatgaggcgcagggg
acgctgaaagcctggcgtagaatgcggataggagaactgacggttaaagtccagccgctg
gcaaaaccgtctgaagacgagttgcatctggcgatgcttaacggtatccgcgataaaggc
ctgaacgtgctcaactggacgcctgcggcagaacaactgcggttacgtttgcattgtgcg
gcgaaatggctgccggagtatgactggcctgcggtggacgacaggacattgctggccacg
ctggagaactggctgctgccgcatatgagcggcgtgcattcgctgcgcggcctgaaatcg
ttggatgttcaccaggcattgagcggattactggattattccctgcagcaacgtctggtg
agttcgttacccacacattacactgtgccgacgggaagtcggatagccattcgttatcac
gaagataacccgccggcgctggcggtcagaatgcaggagatgtttggcgaggccaaaacg
ccgactattgcggagggccgcgtgccactggtgctggagctcttatcccccgcgcagcga
ccattgcagattactcaggatttggccgcgttctggcaagggtcgtatcgcgacgtgcaa
aaagagatgaaagggcgctaccccaaacatgtctggccggacgatccggcgaacacggcg
ccgacgcggcgaaccaaaaagtattcgtag
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