Citrobacter sp. Y3: HAP28_10440
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Entry
HAP28_10440 CDS
T10856
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ciy Citrobacter sp. Y3
Pathway
ciy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ciy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HAP28_10440 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ciy03400
]
HAP28_10440 (mfd)
Enzymes [BR:
ciy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HAP28_10440 (mfd)
DNA repair and recombination proteins [BR:
ciy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HAP28_10440 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QIO39425
LinkDB
All DBs
Position
complement(2212649..2216095)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQQRYTLPVKAGDQRLLGELTGAACATLVAEIAERHDGPVVLVAPDMQNALRLHDEIR
QFTDQMVMSLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALRLQLDSAGYRHVDQVMEHGEYATRGALLDLYPMGSEQPY
RLDFFDDEIDSLRLFDADTQRTLEEVDAINLLPAHEFPTDKTAIELFRSQWRDTFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGDLENSAERFQADTL
ARFENRGVDPMRPLLPPESLWLRVDELFSELKRWPRVQLKTDHLPAKAANTNLGFQSLPD
LAVQAQQKSPLDALRKFLETFNGPVIFSVESEGRRESLGELLARIKVAPKRIMRLDEATE
AGRYLMIGAAEHGFIDTTRHLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDGFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGTHKLLQSDVKL
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDALVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDYIPDV
NTRLSFYKRIASAKSENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG
NEKGGTIEFAEKNHVNPGWLIGLLQKQPQHFRLDGPTRLKFIQDLTERKTRMDWVRQFMQ
QLEENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaacaacgttacacgctgcccgtgaaagcgggcgatcagcgcctgttaggt
gaactgaccggggctgcctgcgccacactggtggcggaaattgccgaacgtcatgatggt
cccgtcgtgctcgtggcgcccgatatgcaaaacgcgctgcgcctgcatgatgaaatccgt
cagtttaccgatcagatggtcatgagcctcgcggactgggaaaccctgccctacgacagt
ttctccccgcatcaggaaattatctcctcacgtctctccacgctgtatcagttgccgtcg
atgcagcgcggcgtgctgatcgtcccggtcaataccctgatgcagcgcgtctgcccgcac
agctatctgcacggtcatgcgctggtgatgaaaaaaggccagcgtttatcgcgcgatgcc
ctgcgtttacagctcgacagcgctggttaccggcacgttgatcaggtcatggaacatggc
gaatacgctacccgcggcgcgctgctggatttgtatcctatgggcagcgaacagccctat
cgtctggatttcttcgacgatgaaattgacagtctgcgcctgtttgacgcggacacccag
cgcacgctggaagaagtcgacgccatcaatctgctgcccgcccacgagttcccaaccgac
aaaacggcgatcgaactgtttcgcagccagtggcgcgataccttcgaggtgaagcgcgac
gcagagcatatttatcaacaggtcagcaaaggcactttgccggcggggatcgaatactgg
cagccgctgtttttcagcgagccgctgccgccgctgtttagctatttcccggccaatacg
ctggtggtcaatactggcgatttagaaaacagcgccgagcgtttccaggccgatacgctg
gcgcgtttcgaaaaccgtggcgtggatccgatgcgtccgctgctgccaccggagtccctc
tggttgcgtgtcgatgagctcttttctgaactcaaacgctggccgcgcgtgcagctcaaa
accgaccaccttcccgccaaggcggctaataccaacttaggcttccagtcgctgccggat
ctcgcggttcaggcgcagcaaaaatcaccactggatgcgctgcgcaaattcctcgagacc
ttcaacgggccggtgattttctcggttgagagtgaaggccgccgtgaatctctgggtgaa
ctgctcgccagaatcaaagtcgcgccgaagcgcattatgcgtctggatgaagcgacggag
gctggacgctacctgatgattggcgccgccgagcacgggtttatcgatacgacgcgccat
ctggcactcatttgtgaaagcgacctgctgggcgagcgcgtggcgcgccgtcgtcaggat
tcacgccgcacgattaacccggatacgctgatccgcaacctggcagagttgcatccgggt
caacccgtggtgcatctggagcacggcgttggacgctatgccgggatgaccacgctggaa
gcgggcgggatcaaaggtgaatatctgatgctcacctacgctaatgacgccaaactgtac
gtcccggtctcctctttgcatctgatcagccgttacgccggaggcgcagaagagaacgca
ccgctgcataaactcggcggcgacgcctggtcacgcgcgcgacaaaaagcggcagagaaa
gtgcgcgacgtggcagccgagttgttggacatctacgcccagcgcgcggcaaaagagggc
ttcgccttcaaacacgatcgcgagcagtatcaactgttctgcgacggtttcccctttgaa
accacccccgaccaggcgcaggcgattaacgcagtacttagcgacatgtgtcagccgctg
gcgatggaccgcctggtgtgtggtgacgttggatttggtaaaaccgaagtggcgatgcgc
gccgcgtttctcgcggtcgaaaaccacaagcaggtggcggtgctggtgccaaccactctg
ctcgcccagcaacactttgataatttccgcgaccgttttgccaactggccggtgcgcatc
gaaatgctttcccgcttccgtagcgccaaagaacaggcgcagatcctggaacaggttgcc
gaagggaaaattgatattctgatcggtacgcataaactgctgcaaagcgatgtgaaactg
aaagatctggggctactgatcgtcgatgaagagcaccgcttcggcgtgcggcataaagag
cggatcaaagcgatgcgcgccgatgtggacattctgacgctgaccgccacgccaatcccg
cgtacgctgaacatggccatgagcggcatgcgcgatctgtcgattatcgccacgccgcca
gcgcggcgtctggcggtgaaaacgtttgttcgcgagtacgatgcactggtggtccgtgag
gcaattctgcgtgaagtgctgcgcggcgggcaggtctactatctttataatgatgtcgag
aacatccagaaagccgccgacaggctggcggagctggtgccggaggcgcgaattgccatt
ggtcatgggcagatgcgcgaacgcgaactggaacgcgtgatgaacgacttccaccatcag
cgttttaacgtgctggtctgtaccaccattatcgaaaccgggattgatatcccgaccgcc
aacacgattattatcgagcgtgcggatcacttcggtctggcacagttacaccagttgcgc
ggccgcgtaggacgttcacaccatcaggcgtatgcctggctgctgacgccgcatcccaaa
gcgatgaccaccgacgcgcaaaaacgcctggaagcgattgcctcgctggaagacctgggg
gcgggctttgcgctggcgactcacgatctggagatccgcggcgcaggtgaactgctcggg
gaagaacagagcggttcgatggaaaccatcggcttttcgctgtatatggagctgctggaa
aacgccgtcgatgccctgaaggccggacgcgagccatcgctggaagatctcaccagccag
caaactgaagtcgaactgcgtatgccgtcgctgctgccggacgattacatcccggacgtg
aatacccgcctgtcgttctacaagcgtatcgccagcgcgaagagcgagaatgaactggaa
gagatcaaagtggagctgatcgaccgcttcggtctgctgcccgatccggcgcgtaccctg
ctggatatcgcccgcttgcgtcaacaggcgcagaagctgggtatccgcaaactggaaggc
aatgagaaaggcggcactatcgaattcgccgagaagaaccatgttaacccaggctggctg
attggactgctgcaaaaacagccgcagcacttccgtcttgacgggccgacacgactgaag
ttcatccaggatctgaccgagcggaaaacgcggatggactgggtgcgtcagtttatgcag
caactggaagaaaacgccgtagcgtga
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