Citrobacter sp. Y3: HAP28_12890
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Entry
HAP28_12890 CDS
T10856
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ciy Citrobacter sp. Y3
Brite
KEGG Orthology (KO) [BR:
ciy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ciy03016
]
HAP28_12890
Enzymes [BR:
ciy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HAP28_12890
Transfer RNA biogenesis [BR:
ciy03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HAP28_12890
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
ODP
PilZ
Motif
Other DBs
NCBI-ProteinID:
QIO39872
LinkDB
All DBs
Position
2727823..2729757
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI
IAVIHTEKDRESAEPEELVEPFLTRFVGKVQGKNDRLSIVPDHPLLKDAIPCRAARGVEH
EFKEGDWAVAEMRRHPLKGDRTFFAELTQFITFADDHFVPWWVTLARHNLEKEAPDGVAT
EMLDEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGKLQLTVAIADPTAWIAEGSK
LDNAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTIAADGTIEDDITF
FAATIESKAKLAYDNVSDWLENRGRWQPESEDIAQQIRLLQRICLSRGEWRHQHALVFKD
RPDYRFILGEKGEVLDIVAEPRRIANRIVEESMIAANICAARVLRDKLGFGIYNVHLGFD
PANADALAALLQSHGMHVNAEEVLTLEGFCKLRRELDAQPSGFLDSRIRRFQSFAEISIE
PGPHYGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETINRPQEEITVQMAERRRLNRM
AERDVGDWLYARFLSDKAGTDTRFSAEIIDVSRGGMRVRLVDNGAVAFIPAPFLHAVRDE
LVCSQESGTIQIKGETVYKVTDVIDVTIAEVRMETRSIIARPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaggacaacccgctgctagcgcagcttaaacagcaactgcattcccagacgcca
cgtgctgaaggggtggtaaaagccacggaaaaaggctttggcttcctggaagtcgatgcg
caaaaaagttatttcattccaccgccgcagatgaaaaaagtgatgcatggcgaccgtatc
atcgccgtcatccacactgaaaaagatcgcgaatctgcggagccggaagagctggttgag
ccgttcctgacccgctttgtcggtaaagtacagggtaagaacgatcgcctgtccatcgtg
ccggatcacccgctgttgaaagacgccattccctgccgcgccgctcgcggtgtggagcat
gaatttaaagagggtgactgggccgttgctgaaatgcgccgtcatccgctcaaaggcgat
cgcaccttcttcgccgaattaacccagttcatcacgtttgccgacgaccacttcgtcccc
tggtgggtcaccctggcgcggcataatcttgaaaaagaagcgccggatggcgtagcgacg
gaaatgctggatgaagggctggaacgtcaggatctgacagcgctgaatttcgttactatc
gatagcgccagcacggaagatatggacgatgcgctgtatgccgaagaactggctgacggc
aaattgcaactgaccgtggcgattgccgaccctaccgcctggatcgccgaaggcagcaaa
ctggataacgccgcgaaaatccgggcgttcactaactatctgccgggcttcaacattcca
atgttgccacgcgaactgtctgacgacctctgctcactgcgcgccaatgaagtgcgcccg
gtgctcgcctgtcgcatgaccattgccgctgatggcaccattgaagatgacatcacgttc
ttcgctgccaccattgagtcaaaagcaaaactggcttatgacaacgtctctgactggctg
gaaaaccgcggtcgctggcagcctgaaagtgaagacatcgcccagcagattcgtctgctg
cagcgtatttgcctgagccgtggtgagtggcgtcatcagcatgcgctggtgtttaaagat
cgcccagactaccgcttcattctcggcgaaaaaggtgaagtgctcgatatcgtcgcagaa
ccgcgtcgcatcgcgaaccggattgtcgaggaatccatgattgcggccaacatctgtgcc
gcacgcgtgctgcgcgacaaactcggctttggcatttacaacgttcacctgggctttgac
ccggccaatgccgatgcgctggccgcgctgctgcaatctcacggaatgcatgtgaacgcc
gaagaagtattaactctggaaggcttctgcaagctgcgtcgtgaactggatgcgcaaccg
tcgggtttcctcgacagccgtattcgtcgcttccagtcttttgcggaaatcagcattgag
ccgggtccgcactatgggctgggtctggaggcttacgccacctggacgtcaccgattcgt
aagtatggcgatatgatcaaccatcgcctgctgaaagccgtcatcaaaggtgaaaccatt
aaccgtccgcaggaagagatcaccgtacagatggctgagcgtcgtcgcctgaaccgcatg
gcggaacgcgatgttggcgactggttatatgcccgcttcctgagtgataaagcgggcacg
gatacccgcttctcggcggaaatcattgatgtcagccgtggcgggatgcgtgtacgtctg
gtggataacggcgcggtagcttttatccctgcgccattcctgcatgcggtgcgcgatgaa
ctggtttgcagccaggagagcggcaccatccagatcaaaggtgaaaccgtctataaagtg
acggatgtgattgatgtcaccatcgccgaagtgcggatggaaacccgcagcatcatcgcc
cgtcctgccgcctga
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