Citrobacter sp. Y3: HAP28_20160
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Entry
HAP28_20160 CDS
T10856
Symbol
truD
Name
(GenBank) tRNA pseudouridine(13) synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
ciy Citrobacter sp. Y3
Brite
KEGG Orthology (KO) [BR:
ciy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ciy03016
]
HAP28_20160 (truD)
Enzymes [BR:
ciy01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
HAP28_20160 (truD)
Transfer RNA biogenesis [BR:
ciy03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
HAP28_20160 (truD)
Prokaryotic type
HAP28_20160 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
QIO41162
LinkDB
All DBs
Position
complement(4136128..4137177)
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AA seq
349 aa
AA seq
DB search
MTEFENLTYLHGKPQGFGLLKASPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVAD
ALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCKVLEYARHKRK
LRLGALKGNAFTLVLREISHRDEVESRLQAINAGGVPNYFGAQRFGIGGSNLQGALRWAQ
SDAPVRDRNKRSFWLSAARSALFNQIVSERLKKTDFNQVVDGDALQLAGRGSWFVATQEE
RAELQHRVDEKELMVTASLPGSGEWGTQRDALAFEQSAIAEETALQSLLLREKVEASRRA
MLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgacagagtttgaaaatctcacgtatcttcacggtaagccgcaaggcttcggtctgctg
aaagccagtccggaagattttgtggtggtcgaagatttaggtttcgaacccgatggcgaa
ggtgaacacattctggtgcgtattcttaaaaacggctgcaacacccgttttgtggctgac
gcgctggcgaagtttctgaaaattcatgcccgtgaagtgagttttgccgggcaaaaggat
aagcatgcggtcaccgaacagtggctgtgcgcgcgcgtaccaggcaaagagatgcccgac
ctgagcgctttccagcttgaaggttgcaaggtgctggaatatgcgcgtcacaaacgcaag
ctacgtttaggcgcgctgaaaggcaatgcgttcacgctggtgctacgggaaatcagtcat
cgtgatgaagtggaatcccgtctgcaagcgataaacgctggcggcgtaccgaactatttc
ggcgctcagcgttttggtatcggcggcagcaatctgcaaggtgcgctgcgctgggcgcaa
agcgatgcaccggtcagggatcgcaataaacgcagtttttggttgtcggcggcccgcagt
gcgttgtttaatcaaattgtcagcgagcgtctgaaaaaaacagactttaatcaagttgtt
gacggcgatgcgctacaattagcgggacgcggaagctggtttgtcgccacgcaagaagaa
cgggcggaattacagcatcgtgtcgatgaaaaagaactgatggtgacggcttcgcttccc
ggcagcggcgagtggggaacccaacgggatgcgctggcgttcgaacagtccgcgattgcc
gaggagaccgcgttgcagtcgctgctgctgcgtgaaaaagttgaggcgtcgcgaagagcg
atgctgctctatccgcagcaattaagctggaactggtgggatgatgtcaccgtcgagtta
cgtttttggctgccggcggggagcttcgccaccagcgttgtgagggaactgatcaacaca
atgggtgattatgcgcatattgctgagtaa
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