Citrobacter sp. Y3: HAP28_20465
Help
Entry
HAP28_20465 CDS
T10856
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ciy Citrobacter sp. Y3
Pathway
ciy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ciy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HAP28_20465 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ciy03400
]
HAP28_20465 (recD)
Enzymes [BR:
ciy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HAP28_20465 (recD)
DNA repair and recombination proteins [BR:
ciy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HAP28_20465 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
Helicase_RecD
UvrD_C_2
Viral_helicase1
AAA_11
SH3_13
AAA_22
UvrD-helicase
SLFN-g3_helicase
AAA_16
nSTAND3
AAA_28
MukB
PhoH
FtsK_SpoIIIE
DEAD
UvrD_C
Acetyltransf_6
CbiA
T2SSE
DO-GTPase1
Bcl-2
NPHP3_N
TrwB_AAD_bind
AAA_7
Motif
Other DBs
NCBI-ProteinID:
QIO41219
LinkDB
All DBs
Position
complement(4201444..4203261)
Genome browser
AA seq
605 aa
AA seq
DB search
MTLQKRLLEAVGQKQLRPLDVQFALAVTGEHEPAVTLAAALLSRDAGEGHVCLPLSQLAL
NADNPPFYSSCLSDIGEPENWEECLLASDAVSHGERPSPMVLYGDRLYLNRMWCNERTVA
HFFSEVNRPIEVDETLLTQTLEALFPTTNEINWQKVAAAVALTRRISVISGGPGTGKTTT
VARLLAALIQMAEGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPDDASTL
HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPSHGRIIFLGDRDQ
LASVEAGAVLGDICAWVNAGYTPERAQQLARLTGMSVPAGAGEDAATLRDSLCLLQKSYR
FGSDSGIGQLAAAINRGDKAAINDIFLQGFSDIDKRTLESSEDYTAMLENALAGYGHYLQ
LLQARAEPALIIQAFNEFQLLCALREGPFGVSGLNERIELAMQQKRKIHRLPHSRWYEGR
PVMIARNDSALGLFNGDIGVALDRGQGLRVWFAMPDGSIKSVQPSRLPEHETTWAMTVHK
SQGSEFDHAALVLPTQRTPVVTRELVYTAVTRARRRLSLYADERILGSAIATRTERRSGL
STLFK
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgacgctacagaagcgattacttgaggccgtcgggcagaagcaactgcgcccgctggat
gtgcaattcgctctggcggtgaccggcgaacatgaacctgccgtgacgctggcagcggcg
ttactcagccgggatgccggagaagggcacgtctgtttaccgctttctcaactggcgctg
aacgcggataatccccctttctattcttcatgccttagcgacattggcgaacccgagaac
tgggaagaatgcctgctcgcttccgacgccgtcagtcatggagagcggccatcgccgatg
gtcctttatggcgaccgtttgtatctgaaccggatgtggtgcaacgaacgtaccgttgct
catttctttagcgaggtgaatcgacccattgaggtggatgaaaccttgctgacgcaaacg
ctggaagcgctgttcccgacgacaaacgaaatcaactggcaaaaagtcgccgcggcggtc
gcgctgacccgccgtatttcggtgatttcaggcgggccgggaacggggaaaacaaccacc
gtggccaggctgttggcggcgctgatccagatggcggaaggcgagcgttgccgtattcgc
ctggcggcgccgacgggtaaagcagcggcgcgtttgacggagtccttaggcaaggcgctg
cgtcagttgccgctgacggatgaacaaaagaaacgtatcccggatgatgccagcacgctg
caccggttgctgggtgcgcaacccggcagtcagcgtttacgccatcacgcgggcaacccg
ctacatctggatgtgctggtggtggatgaggcgtcaatgatcgacctgccgatgatgtcg
cgcttgatcgacgcattgccgtcgcacggacgtatcattttccttggcgatcgcgatcag
cttgcttcggtcgaggcgggggcggtgctgggggatatctgtgcctgggtgaatgcgggt
tatacccctgaacgggcgcagcaactggctcgcttgacggggatgtccgttccggcaggt
gctggcgaagacgccgccacgctacgggacagcctctgtctgctgcaaaagagctaccgt
tttggcagcgattccggcatcgggcaactggcggcggcgattaaccgtggcgataaggcg
gcgataaacgacattttcctgcaaggcttcagcgatatcgataaacggacgctggagagc
agtgaagattacaccgccatgcttgaaaacgcactggcaggttatggacactatctgcaa
ctgcttcaggcgcgcgcggagcctgcattaatcattcaggcattcaatgagttccagctg
ctgtgcgcgctgcgcgaagggccgtttggcgtgagcggactgaatgaacgtatcgaactg
gctatgcagcaaaagcgcaaaattcatcgcctgccacattcccgctggtatgaagggcgg
ccagtgatgattgcccgtaacgacagcgcgctgggcttgtttaacggcgatatcggtgtg
gcgctcgatcgtgggcaaggattaagagtctggtttgcgatgccggatggcagtattaag
tctgtgcagcccagccgcctgccagagcatgaaacgacctgggcaatgacggtgcacaaa
tctcagggctcggagttcgatcatgccgcgctggtgttacccacgcagcgcacgccggtg
gtgacacgggaactggtgtataccgccgtgacccgcgcacgtcgccgcctgtcgttatat
gccgatgaacgcatacttggcagtgcgattgccacccgaaccgaacgacgcagtgggctg
tcgacgttgtttaaatga
DBGET
integrated database retrieval system
