Citrobacter sp. Y3: HAP28_20470
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Entry
HAP28_20470 CDS
T10856
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ciy Citrobacter sp. Y3
Pathway
ciy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ciy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HAP28_20470 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ciy03400
]
HAP28_20470 (recB)
Enzymes [BR:
ciy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HAP28_20470 (recB)
DNA repair and recombination proteins [BR:
ciy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HAP28_20470 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QIO41220
LinkDB
All DBs
Position
complement(4203258..4206803)
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AA seq
1181 aa
AA seq
DB search
MNDVAESLDPLRLPLTGERLIEASAGTGKTFTIAALYLRLLLGLGGSSAFPRPLTVEELL
VVTFTEAATEELRGRIRSNIHELRIACLRESTDNPLYARLLDEIDDKKQAAQWLLLAERQ
MDEAAVFTIHGFCQRMLSLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA
EVVFETWKGPQALLADINRYLQGEAPVIKAPPPDDETLASRHQQIVQRINALKQQWCDAV
GELEGLMEASGIDRRKFNRGNQGKWIEKISAWAQSATQSYQLPEALEKFSQRFLEDRTKE
GGVVPQHPLFVAIDELLAEPLTLRDLMITRALAEIRETVAKEKRRRGELGFDDMLSRLDS
ALRSESGDALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWQHQPDTALLLIGDPKQAIY
AFRGADIFTYMKARSEVSAHYTLDTNWRSAPGMVNSVNRLFGLMDDAFMFREIPFQPVKY
AEKNQSLRFEFYGETQPAMTMWLMEGESCGIGDYQSYMAQVCAAQIRDWLKAGLRGEAML
ISGHDARPVSAADISVLVRSRQEAAQVRDALTQLAIPSVYLSNRDSVFETLEAQEMLWLL
QAVMAPEKENTLRSALAASMMGLNARDIDMLNGNENAWDRVVDEFVGYRQIWQKRGVMPM
LRALMSARQIAENLLATAGGERRLTDILHISELLQEAASQLESEHALVRWLSQHILEPDS
NASSQQMRLESDSHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQAFYHDRNSFEAVLDL
SEADESVALAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR
LLQKGEPMDAAGLRSAIDAVCDENIVCRIPDAVSMEPLPGTVASEASLNARRVQRTPGDN
WRVTSYSGLQQRGHGIAQDLMPRLDIDATGVGEVVEEPELTPHQFPRGASPGTFLHSLFE
DLDFTQPVEAAWVQEKLELGGYDADWEPVITAWVTTILHAPLNETGVSLSQLSAREKQVE
MEFYLPISQPLIAENLDALIRQFDPLSAGCPPLEFTQVRGMLKGFIDLVFRHNGRYYLLD
YKSNWLGENSAAYTPEAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYERHFGGVIY
LFLRGVDSKQPQQGIYTTRPAGELITRMDEMFAGVALEEAS
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatgtcgccgagtcccttgatcccctgcgcttgcccctcacgggcgagcgcctg
attgaagcctctgcgggcaccggcaaaacctttactatcgcggcgctctatctgcgcctg
ctcctcgggctcggcgggtcttccgcctttccccgtcccctgaccgttgaagaactgctg
gtggtaacctttactgaggccgccaccgaagagttgcgcgggcgtatccgcagtaatatt
catgagctgcgtatcgcctgcctgcgcgaatcgactgacaaccccctttatgcccgtctg
ctggatgaaatcgacgataaaaagcaggcggcgcagtggctgctgctcgccgaaagacag
atggatgaggcggcggtattcaccatccacggtttttgtcagcgcatgctgagtctgaat
gccttcgaatccggcatgttatttgaacaacagctgatcgaggatgaatcgcttctgcgt
tatcaggcctgtgcggatttctggcgccgtcactgttaccccctgccgcgtgaaattgcc
gaggtggtgtttgaaacgtggaaagggccacaggcgctgctggcggatattaaccgttac
ctgcaaggggaagcgccggttatcaaagcgccaccgccggatgacgaaacgctggcgtcc
cgtcatcagcagatcgtgcagcgaatcaatgcgcttaagcaacaatggtgtgatgctgtg
ggtgaacttgagggattgatggaagcctcaggcatcgaccggcgtaaattcaaccgtggc
aaccagggcaaatggattgagaagatcagcgcctgggcgcagtccgcaacgcaaagctac
cagttgccagaggcactggagaaattctctcagcgtttccttgaggacagaaccaaagaa
ggcggcgttgtgccgcagcatccgctgtttgtcgcgattgatgaattactggcggaaccg
ctgacgctcagagatctgatgatcacccgcgcgctggcggagatccgtgaaacggtggcg
aaagaaaaacgccgccggggtgaactggggtttgacgatatgctcagccgactggatagc
gcgttgcgcagtgaaagcggcgatgcgctggcggcggcgatccgtacccgcttcccggta
gcaatgatcgatgagttccaggataccgatccgcagcaataccgtattttccgtcgcatc
tggcagcatcagccagacactgcactgctactgattggcgacccgaagcaggcgatttat
gcgtttcgcggcgcggatatttttacctatatgaaggcccgcagtgaggtcagcgcgcac
tataccctcgacaccaactggcgttccgcaccaggcatggtgaacagcgtcaacaggctg
ttcggcctgatggatgacgctttcatgttccgcgagatcccgttccagccggtgaaatac
gccgaaaaaaaccagtcgctgcgttttgaattttacggcgaaactcagcccgcaatgacg
atgtggttgatggaaggagaaagctgcggaataggcgattatcaaagctatatggcgcag
gtgtgtgctgcgcagatccgcgactggctgaaggccgggttgcgtggagaggcgatgctt
atcagcggccacgacgcgcgtccggtgagcgcggcggatatcagcgtgctggtgcgtagc
cgccaggaagcggcgcaggtacgcgatgctctgacacaactggcgattccgtccgtctat
ctttccaaccgcgacagcgtgtttgaaacgctggaagcgcaggagatgctctggcttcta
caggcggtgatggcgccggaaaaagaaaatacgctacgcagcgcgctggcggcctcaatg
atggggttgaacgcgcgcgacattgacatgctcaatggcaatgaaaacgcctgggatcgg
gtggttgacgagtttgtcggctaccgtcaaatctggcaaaaacgtggcgtgatgccgatg
ctgcgtgcgctgatgtcagcgcgacagattgcggagaacctgctggcaacggcgggaggt
gagcgtcgcctgaccgatattttgcacatcagtgagctattgcaggaggccgcttcgcaa
ctggaaagcgagcatgcgctggtgcgctggctctcgcagcatattcttgagcctgacagc
aatgcttccagccagcaaatgcgtctggaaagcgacagccatctggtgcagatcgtcacc
atccacaagtcaaaagggctggagtatccgctggtctggctgccgtttatcacgaatttc
cgcgttcaggatcaggcgttttatcacgaccgcaactcgtttgaagcagttctggatctg
agcgaggcggacgaaagcgtggcgctggcggaagccgaaaggctggcggaagatttgcgt
ttactgtacgtggcgctgacgcgttcagtctggcactgcagtctgggcgtcgcacctctg
gttcgtcgtcggggcgataaaaagggcgataccgatgtgcatcagagcgcgctggggcgt
ctgctgcaaaaaggcgaaccgatggatgccgccgggctacgctcggcgatagacgcagtt
tgcgatgagaacatcgtctgtcgtatcccggacgcggtcagtatggagccgttgcctggc
accgttgcgagcgaggcgtctctgaatgcccgacgggtacaacgaacgccgggcgacaac
tggcgggtgaccagctattccggcctgcaacagcgtggtcacggcatcgcacaggatctg
atgccgcgactggatatcgatgcgacaggcgtgggtgaagtggttgaggagccggaactg
acgccgcaccagttcccacgcggcgcatcgccaggaacatttttacacagcctgtttgaa
gatctcgattttacccagccggttgaggctgcctgggtgcaggaaaaactggagcttggt
ggctacgatgccgactgggaaccggtcatcaccgcgtgggtgacgacgattctccatgcg
ccactcaatgagactggcgtcagtctgagccagctttctgcgcgtgaaaaacaggtcgag
atggagttttatctgcccattagccaaccgcttattgcggaaaacctggatgcgctgatc
cgccagtttgacccgctctcggcgggctgtccgccactggagttcacccaggttcgcggg
atgctgaagggctttatcgatctggtatttcgtcacaacgggcgctattacctgctggat
tacaaatcgaactggctgggagaaaacagcgccgcttacaccccagaggcgatggcggcg
gccatgcaggcgcatcgctatgatttgcagtatcagctctataccctcgcgctgcaccgg
tatctgcgccatcgcatcgcagattacgactacgagcgccattttggcggcgtgatttat
ctgttcctgcgcggcgtggacagcaaacagccgcagcaggggatttacactacacgcccg
gcgggtgagttgattacccggatggacgagatgtttgccggggtggcgctggaggaggca
tcatga
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