Citrobacter sp. Y3: HAP28_22350
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Entry
HAP28_22350 CDS
T10856
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ciy Citrobacter sp. Y3
Pathway
ciy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ciy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HAP28_22350 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciy03019
]
HAP28_22350 (rnr)
03016 Transfer RNA biogenesis [BR:
ciy03016
]
HAP28_22350 (rnr)
Enzymes [BR:
ciy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HAP28_22350 (rnr)
Messenger RNA biogenesis [BR:
ciy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HAP28_22350 (rnr)
Transfer RNA biogenesis [BR:
ciy03016
]
Prokaryotic type
tRNA degradation factors
HAP28_22350 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
MetOD2
Motif
Other DBs
NCBI-ProteinID:
QIO41566
LinkDB
All DBs
Position
complement(4613290..4615731)
Genome browser
AA seq
813 aa
AA seq
DB search
MSQDPFQEREAEKYENPIPSREFILEHLTKREKPASRDELAVELNIKGEEQQEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP
EDIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYIWPAA
VEKQVAGLKEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDQEARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQELREQYAPLVKHIEELHNLYKVLDKA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAQEP
ALFRIHDKPTTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGHKGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLTGESSGQTYRLGDRVEVKVEAVNMDERKI
DFSLISSERAPRNEGKTARERAKKGDADKKTGRSRQVGKKANFEPDSAFRGEKKQKPKAA
KKEARKAKKPSEKTQKIAAATKAKRAAKKKTAQ
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagctgaaaagtacgaaaatcctatcccaagc
cgggaatttatcctcgaacatttaactaaacgcgaaaaaccggccagccgcgatgagctg
gctgtggaactgaacataaaaggcgaagagcagcaggaagccctgcgtcgccgcctgcgc
gcgatggagcgtgacggacaactggtcttcacccgtcggcagtgttatgcgctgccggaa
cgcctcgatctgctgaaaggtaccgttattggccaccgtgatggctatggctttctgcgc
gtcgaagggcgtaaagacgatttgtatctctccagcgagcagatgaaaacctgcattcat
ggcgatcaggtattggcgcaaccgctgggcgcggatcgtaaaggccgccgtgaagcgcgt
attgtgcgcgttctggtgccaaaaaccagccagattgtcggtcgttactttactgaagcg
ggcgtgggttttgtggttcctgacgacagccgtctgagcttcgatattctgatcccgcct
gaagatatcatgggcgcgcgcatgggctttgtggtggtggttgaactcacccagcgcccg
acccgccgcaccaaagcggtagggaaaatcgtcgaagtgctgggcgacaacatgggaacc
ggtatggccgtcgatatggcgctgcgaacccatgaaatcccgtatatctggccagccgcc
gttgagaaacaagttgccggtctgaaagaagaggtgcctgaagaggcaaaagtcgggcgt
gtggatttacgcgatttgccgctggtcaccatcgacggcgaagatgcccgcgactttgat
gatgcggtctattgcgagaagaaacgcggtggcggctggcgtttgtgggtggcgattgct
gacgtgagctattacgtgcgtccgccgacgccgctggatcaggaagcgcgtaatcgcggg
acgtccgtgtacttcccgtcgcaggtggtaccgatgctaccggaagtgctctccaacggc
ctgtgctcactgaacccgcaggttgaccgcctgtgcatggtctgcgaaatgaccatctct
accaaaggccgtctgacgggatataaattctacgaagcggtgatgagctcacatgcgcgt
ctgacctacaccaaggtctggcacatgttgcagggcgatcaggagttgcgcgagcagtat
gcgccgctggttaagcatatcgaagagctacacaacctctacaaagtgttggataaagcc
cgtgaagagcgcggcggcatctcgtttgagagtgaagaagcgaagttcattttcaacgcg
gaacgccgtattgagcgaattgagcagacccagcgtaacgatgcgcacaagctgatcgaa
gagtgcatgattctggcgaacatctcggcagcgcgtttcgttgagaaagcccaggagcct
gcgctgttccgtatacacgacaaaccgacgactgaggcgatcacttccttccgttctgtt
ctggcggagctggggctggaactgcctggcggtaataagccggagccgcgcgattacgcg
gaattgctggaatcggttgccgatcgccctgacgccgaaatgctgcaaacgatgctgctg
cgttcgatgaagcaggcgatttacgatccggaaaaccgcggtcactttggtctggcgttg
cagtcgtatgctcactttacctcgccgatccgtcgttacccggatctctccctgcaccgc
gccattaagtatctgttggcgaaagagcagggccataaaggtaacaccaccgaaacgggt
ggctaccattattcgatggaagagatgctgcaactgggtcagcactgttcgatggctgag
cgccgtgcggatgaagcaacccgtgacgtcgctgactggctgaagtgcgacttcatgctg
gatcaggtcggcaacgtctttaaaggcgtgattgccagcgtcaccggctttggcttcttt
gtgcgtctggacgaactgttcatcgatggcctggtccacgtctcctcgctggataacgac
tactatcgttttgaccaggtgggacagcgcctgaccggcgaatccagcggccagacttat
cgtcttggcgatcgcgtggaagtgaaagtcgaagctgtaaatatggatgagcgcaagatt
gatttcagcctgatttccagcgagcgtgcgccgcgtaacgaaggtaaaacggcgcgtgaa
agagcgaagaaaggcgatgcggataaaaaaaccggccgcagtcgtcaggttggtaagaaa
gccaattttgagcctgacagcgctttccgtggcgagaagaaacaaaaaccaaaggcggcg
aagaaagaggccagaaaagcgaaaaagccttctgagaaaacgcaaaaaatagcggcggcg
acaaaagcaaagcgtgccgctaaaaagaaaacggcacagtaa
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