KEGG   Citrobacter sp. Y3: HAP28_22385
Entry
HAP28_22385       CDS       T10856                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
ciy  Citrobacter sp. Y3
Pathway
ciy02024  Quorum sensing
ciy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ciy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HAP28_22385 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    HAP28_22385 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ciy03019]
    HAP28_22385 (hfq)
   03036 Chromosome and associated proteins [BR:ciy03036]
    HAP28_22385 (hfq)
Messenger RNA biogenesis [BR:ciy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     HAP28_22385 (hfq)
Chromosome and associated proteins [BR:ciy03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    HAP28_22385 (hfq)
SSDB
Motif
Pfam: Hfq Herpes_capsid LSM Hfq_1
Other DBs
NCBI-ProteinID: QIO41573
LinkDB
Position
complement(4622098..4622406)
AA seq 102 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNAGGGTSSNYHHGSGAQGSAAQQDSEETE
NT seq 309 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacgtgtt
ccagtttctatttatttggtgaatggtattaagctgcaaggtcaaatcgagtcttttgat
cagtttgtgatcctgttgaaaaacacggtcagtcagatggtttataagcacgcgatttct
actgttgtcccgtctcgcccggtttctcatcatagtaacaatgccggtggcggtaccagc
agtaactatcatcacggtagcggcgcgcagggttctgcggcgcaacaggacagcgaagag
accgaataa

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