Citrobacter sp. Y3: HAP28_24560
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Entry
HAP28_24560 CDS
T10856
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ciy Citrobacter sp. Y3
Pathway
ciy03030
DNA replication
ciy03410
Base excision repair
ciy03420
Nucleotide excision repair
ciy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ciy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HAP28_24560 (polA)
03410 Base excision repair
HAP28_24560 (polA)
03420 Nucleotide excision repair
HAP28_24560 (polA)
03440 Homologous recombination
HAP28_24560 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ciy03032
]
HAP28_24560 (polA)
03400 DNA repair and recombination proteins [BR:
ciy03400
]
HAP28_24560 (polA)
Enzymes [BR:
ciy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HAP28_24560 (polA)
DNA replication proteins [BR:
ciy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HAP28_24560 (polA)
DNA repair and recombination proteins [BR:
ciy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
HAP28_24560 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HAP28_24560 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH
Prok-E2_E
HHH_5
WHD_BrxR
Motif
Other DBs
NCBI-ProteinID:
QIO41961
LinkDB
All DBs
Position
complement(5079200..5081986)
Genome browser
AA seq
928 aa
AA seq
DB search
MVQIPENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAV
VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT
LAREAEKMGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVTKYGVPPELIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMAGKLEQNK
EVAYLSYKLATIKTDVELELTCEQLEVQQPQADELVGLFKKYEFKRWTADVEAGKWLQAK
GAKPAVKPQETIVIDEAPEEAAVVLSYENYVTILDEATLETWITKLKKAPVFAFDTETDS
LDNISANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRDRALAMLKPLLEDENARKVGQN
LKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEEIAGKG
KNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRV
ERNGVKIDPAVLHKHSEEITLRLAELEQKAHEIAGEVFNLSSTKQLQTILFEKQGIKPLK
KTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYH
QAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIPPKDYLIVSADYSQIELRIMAHLSRD
KGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIP
RKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNGARRAGAE
RAAINAPMQGTAADIIKRAMIAVDGWLEMEKPRVRMIMQVHDELVFEVHKDDLDTVAKKI
HQLMENCTRIDVPLLVEVGSGENWDQAH
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggttcagatcccagaaaacccacttatccttgtagatggctcctcttatctctatcgc
gcataccatgcgtttccgccgctgaccaacagcgcaggcgaaccgacaggcgcgatgtac
ggtgtcctcaatatgctgcgcagcctgatcatgcaatatcagccaacgcatgccgcagtg
gtatttgatgccaagggtaaaaccttccgtgacgaattattcgagcattacaaatcgcat
cgcccgccgatgccggacgatctgcgggcgcagatcgaaccgctgcatgccatggtgaag
gcgatggggctaccgctgctggctgtatctggcgtggaggcggacgatgttattggtacc
ctggcgcgtgaggcagaaaaaatggggcgcccggtgctgatcagtaccggcgataaagac
atggcccaactggtcacgccaaatatcacactcatcaataccatgaccaacaccattctt
ggtccagatgaggtggtgacaaaatacggcgtgccgccggaactgatcatcgatttcctg
gcgctaatgggcgattcctccgataacattccgggcgtaccgggggtcggggaaaagacc
gcgcaggcattgctacaggggctgggcggcctggatactctttatgctgagtccgataaa
attgccgggttgacgttccgtggtgcgaaaactatggcgggtaaacttgagcaaaacaaa
gaggtggcatacctctcctataaactggcgacgatcaaaacagacgttgagctggaactg
acctgcgaacaactggaagtgcaacaaccccaggctgacgaactggttgggctgtttaaa
aagtatgaattcaagcgctggaccgctgatgtcgaagcgggcaagtggttacaagcaaaa
ggggcaaaaccggcggtaaaaccgcaggaaacgattgtcattgatgaagccccggaagaa
gccgctgtcgtactttcttatgagaattacgtgaccattctcgatgaagcgacgctggaa
acgtggattacgaagctgaaaaaagcgccagtgtttgccttcgataccgaaaccgacagt
ctggataacatctccgccaacctggtagggctctcattcgctattgagccgggagtggcg
gcttatgtgccagtggcgcatgactatctggatgcgccggatcaaatctcccgcgaccgt
gcgctggcgatgctcaagccgctcctggaagatgaaaacgcgcgtaaggtcgggcaaaat
ctcaagtacgatcgcggcattctggcgaattatggtatcgaactgcgcggcatcgctttt
gataccatgctcgagtcgtacattctgaacagcgttgccggacgtcacgatatggacagt
ttgtccgatcgctggctgaaacataaaaccatcacttttgaagagattgcgggtaaaggg
aagaaccaactaacctttaatcagattgcgctggaagaggcgggacgttacgcggcagaa
gatgccgatgtcaccttacagctgcatctgaaaatgtggccagagctgcagcagcacaaa
gggccgctgaacgtctttgaaaacatcgaaatgccactggtaccggtgttatctcgtgta
gagcgtaacggtgtgaagatcgaccccgcggtgctgcacaagcactccgaggagatcacg
ctccgtctggcggagctggaacagaaagcccatgagattgcaggagaagtatttaacctt
tcttcaaccaagcagttgcagacgatcctgttcgaaaaacagggcattaagccgctgaag
aaaaccccaggcggcgcgccgtcaacctctgaagaagtgctggaagaactggcgctggat
tacccgctacctaaagtgattcttgagtatcgcggtctggcgaagctgaaatcgacctac
accgacaaactcccgctgatgattaacccgaaaaccgggcgtgtgcacacctcttatcat
caggccgtgaccgcgacgggccgtttgtcatcgaccgatccgaacctgcaaaacattccg
gtacgtaatgaagaagggcgtcgtatccgccaggcatttatcccgccgaaggattacctg
attgtttctgcggactattcgcagattgaattgcgtattatggcgcacctttcacgcgac
aaagggctgctgacggcgtttgccgaagggaaggacattcaccgtgccaccgccgccgaa
gtgtttggtctgccgctggagaccgtgaccagcgaacagcgtcgcagcgcgaaagcgatc
aactttggtctgatctacggtatgagtgcgttcggtctggcgcgccagttgaacattccg
cgtaaagaagcgcagaaatacatggacctctattttgaacgttatcccggcgtgctggag
tatatggaacgcactcgcgctcaggcgaaagagcagggctacgttgaaacgctggaaggc
cgtcgtctctatctgccggatattaaatccagcaacggcgcgcgtcgagcgggtgcggag
cgtgcggcgattaacgccccgatgcaaggaaccgctgccgatattatcaaacgggcgatg
attgcggtcgatggctggctggaaatggaaaaaccgcgcgtgcgtatgatcatgcaggta
cacgatgaactggtgtttgaagtacacaaagacgacctggacacggtagcgaaaaagatc
catcagttgatggagaactgcacacgcattgatgtaccgctgctggtggaagttggaagt
ggtgaaaactgggatcaggcgcactaa
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