Citrobacter sp. Y3: HAP28_24795
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Entry
HAP28_24795 CDS
T10856
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
ciy Citrobacter sp. Y3
Pathway
ciy00300
Lysine biosynthesis
ciy00470
D-Amino acid metabolism
ciy01100
Metabolic pathways
ciy01110
Biosynthesis of secondary metabolites
ciy01120
Microbial metabolism in diverse environments
ciy01230
Biosynthesis of amino acids
Module
ciy_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
ciy00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
HAP28_24795 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
HAP28_24795 (dapF)
Enzymes [BR:
ciy01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
HAP28_24795 (dapF)
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GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
Motif
Other DBs
NCBI-ProteinID:
QIO42002
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Position
complement(5129844..5130668)
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AA seq
274 aa
AA seq
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MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY
RIFNADGSEVSQCGNGARCFARFLRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMGE
PNFEPSQVPFRANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVDDVDTAAVETLGPVLE
SHERFPERANIGFMQILKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLAEEVRV
ELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcaattctctaaaatgcatggccttggcaacgattttatggtcgtcgacgcggtaacg
cagaatgtctttttttcgccagaattgatccgtcgcttatctgacaggcatctgggggtg
gggtttgatcaactgctggtggttgaacctccgtacgatcctgagctggattttcattac
cgcatttttaatgccgacggcagtgaagtgtcgcagtgtggtaacggcgcgcgctgtttt
gcccgttttttgcgcctcaaggggttaaccaacaaacgtgatattcgcgtcagtacggcg
aatgggcggatggtgttgagcgtgacggacgatgagttagtgcgcgtcaacatgggtgaa
cccaattttgagccatcgcaggtgccttttcgcgctaacaaagcggaaaagacctatatt
atgcgagcggcggaacagacaatattgtgcggtgtcgtttcaatgggtaatccgcactgt
gtgattcaggtcgacgatgttgatacggcggcggtggaaacgctgggaccggttctggaa
agtcacgaacgttttcctgaacgggccaatatcggttttatgcagatcttgaaacgcgag
catattcgcctacgcgtttatgagcgcggcgcgggagagacacaggcctgtgggagcggc
gcgtgcgcggccgtcgccgtcggcattcagcaaggtttgctggcggaagaggtccgcgtg
gaattaccgggcggtcgccttgatatcgcctggaaaggtccgggtcatccgttatacatg
actggcccggcggcacatgtctatgacgggtttatccatctatga
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