KEGG   Carettochelys insculpta (pitted-shelled turtle): 142001159
Entry
142001159         CDS       T11194                                 
Symbol
RBBP4
Name
(RefSeq) histone-binding protein RBBP4 isoform X1
  KO
K10752  histone-binding protein RBBP4
Organism
ciz  Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03082  ATP-dependent chromatin remodeling
ciz03083  Polycomb repressive complex
ciz04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:ciz00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    142001159 (RBBP4)
   03083 Polycomb repressive complex
    142001159 (RBBP4)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    142001159 (RBBP4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ciz03036]
    142001159 (RBBP4)
Chromosome and associated proteins [BR:ciz03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     142001159 (RBBP4)
  Histone modification proteins
   HAT complexes
    HATB complex
     142001159 (RBBP4)
   HDAC complexes
    Sin3A-HDAC complex
     142001159 (RBBP4)
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     142001159 (RBBP4)
    PRC2.2
     142001159 (RBBP4)
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     142001159 (RBBP4)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    142001159 (RBBP4)
  Chromatin remodeling factors
   NuRD complex
    142001159 (RBBP4)
   NuRF complex
    142001159 (RBBP4)
   NuRF complex (fruit fly)
    142001159 (RBBP4)
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR75_1st Beta-prop_EML EIF3I WD40_MABP1-WDR62_2nd WD_LRWD1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st WD40_RFWD3 ANAPC4_WD40 Beta-prop_DCAF12 WD40_MABP1-WDR62_1st Beta-prop_RIG_1st eIF2A MIOS_WD40 Beta-prop_SPT8 NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 142001159
NCBI-ProteinID: XP_074832230
LinkDB
Position
24:6554681..6567738
AA seq 465 aa
MARRARGAGAARRGQETIERRLAGTEGGEEPAGRITCTDAMADKEAAFDDAVEERVINEE
YKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHLV
IASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCII
ATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDH
TICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSN
NTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI
FQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDF
SWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDPEGQGS
NT seq 1398 nt   +upstreamnt  +downstreamnt
atggcgcgaagggcgcgcggcgctggagccgcacgcagagggcaggaaacaatagagcgg
cggctggcggggacggagggaggcgaggagccggctggccgcatcacctgcaccgacgcc
atggcggacaaggaggcagcctttgatgatgcggtggaggagcgtgtgatcaatgaagaa
tataaaatttggaaaaagaacactcctttcctatatgatctggtaatgacccatgctctg
gagtggcccagcttaactgctcagtggcttcctgatgtaacaagacctgaaggcaaagat
ttcagtattcaccgactagtcctggggacccacacttcagatgaacaaaaccatcttgtg
atagccagtgttcagctgcccaatgatgatgcacagtttgatgcctcacactatgatagt
gagaaaggcgagtttggaggctttggctctgttagtgggaaaatcgaaattgaaatcaag
atcaaccatgaaggagaagtgaacagggcacgctacatgccccaaaatccatgcatcatt
gccacaaagactccatccagtgatgtcttggtctttgactacaccaaacacccctcaaaa
ccagacccttctggagagtgtaaccctgatctgcgtcttcgtggacaccaaaaggaaggc
tatggattgtcatggaacccaaatctgagtgggcatttgctcagtgcttctgatgatcat
accatctgcttgtgggatattagtgctgttccgaaggagggtaaagtggtggatgcaaag
accatcttcacagggcatacagcagtagtggaggatgtatcttggcacctgctccacgaa
tctctttttggatcggttgctgatgatcagaagctcatgatctgggacactcggtcaaac
aacacctccaaacccagccactcagtggatgctcacacagctgaagtgaactgcctctct
ttcaatccttatagtgagtttattctggctacaggatcagctgataagactgttgcttta
tgggatctgagaaatctaaagctgaagctgcactccttcgaatcacataaagatgaaata
tttcaggttcagtggtctcctcataatgaaactattttggcttccagtggtactgaccgc
aggctaaatgtgtgggacttgagtaaaattggagaagagcagtcccctgaagatgcagag
gatggcccaccggagcttttgtttattcatggtggtcacactgcaaaaatatcagatttc
tcctggaatcccaatgaaccctgggtaatttgttctgtatcagaagacaatattatgcaa
gtctggcaaatggctgagaacatatataatgatgaagatcctgaaggaagtgtggatcca
gagggtcaagggtcctag

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