Carettochelys insculpta (pitted-shelled turtle): 142001459
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Entry
142001459 CDS
T11194
Symbol
HMBS
Name
(RefSeq) porphobilinogen deaminase isoform X1
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz04140
Autophagy - animal
ciz04148
Efferocytosis
ciz05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
142001459 (HMBS)
04148 Efferocytosis
142001459 (HMBS)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
142001459 (HMBS)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ciz04131
]
142001459 (HMBS)
Membrane trafficking [BR:
ciz04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
142001459 (HMBS)
Hops complex
142001459 (HMBS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
Porphobil_deam
VPS11_N
Porphobil_deamC
Beta-prop_KIB1-4
MGS
Motif
Other DBs
NCBI-GeneID:
142001459
NCBI-ProteinID:
XP_074832800
LinkDB
All DBs
Position
25:947763..997468
Genome browser
AA seq
718 aa
AA seq
DB search
MAASLPWRRAASFEREPVREPGGPGAGRPFALPPGITVCDAGGGSLVFGDKEGQIWLSPR
SLQFSSFQAYKLRVTHLYQLKKHSILVSVGEDEEGINPLVKVWNLEKRDGGSPLCTRIFP
AIPGNKPTVVSCLTVHENLNFMAIGFADGSVLLTEGDITQDRHTTTQILHEGSYPVTGLA
FRHLGKITHLFVVTTENILSYLLSVKDYPRLELDTRGCGLRCSALSDPSQDLQFIVAGNE
CVYLYQPDGRGPCFPFEGQKLIVHWYLGYLIIVSKDRKSSPQSECSGSDPQNSDKQILNV
CDLHNKVIVYSSVFDDVMDVLAEWGSLYVLTKDGKIHVFQKKDTQPKLEALDLEKSVAME
NLTPRNGQEENGLKKQVIRVGTRKSQLARIQTDSVVEMLRKRYLHLHFEIVAMSTTGDKI
LDTALSKIGEKSLFTKELENALERNEVDLVVHSLKDLPTSLPPGFTIGAICKRENPHDAV
IFHPKHNGKTLNNLPEKSVVGTSSLRRAAQLKRRFPQLEFRDIRGNLNTRLKKLDEKEDF
SAIILAAAGLRRMGWENRIGQILNPEDCLYAVGQGALAVEVRAKDQDILDMVSVLNDEET
VLCCIAERAFMRHLEGGCSVPVAVNTMLKDAQLYLTGAVYSLDGSDSLKDTMQTAINYSQ
QNEEGANDDTQYVGITATNVPPHAQEAAENLGVELASLLLSKGAKRILSVARQLNDAQ
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggccgcttccctgccgtggcgtcgcgccgcgtccttcgagcgggagccggtgcgggag
ccgggcgggcctggcgccgggaggcccttcgccctgcccccgggcatcaccgtctgcgat
gcgggcggaggcagcctggtctttggggataaggaaggtcagatttggctctcaccccgt
tcccttcagtttagcagtttccaggcttataaactgagggtgactcacctgtaccagctg
aaaaagcacagcatcttggtttctgttggtgaggatgaagaaggcattaacccgctggtt
aaagtctggaacttagagaaacgagatggtgggagtcctctttgcacaaggattttcccg
gcaataccgggtaacaaacccacggttgtatcttgcctaactgtccatgagaatcttaac
ttcatggctattggttttgcagatggaagtgttctactaacagaaggagacatcacacaa
gatcgacacactacgacccagatcttacatgaaggcagttacccagttactggccttgca
ttccgtcacctgggcaaaatcactcatctttttgttgtcactacagagaacatcctgtcc
tatctgctgtcagtgaaggattatcctcgtctggagctggacacacgtggttgtggttta
cgctgctccgccctcagcgacccttcccaggacctccaattcattgtggcaggaaatgag
tgtgtgtatctgtaccagccagatggacgaggcccctgcttcccttttgaggggcagaag
ttgattgttcactggtacctgggatacctcatcattgtttcaaaggaccggaagagctct
ccacaatcagaatgttctgggagtgacccacagaactctgacaagcaaatcttgaatgtc
tgtgacctgcataacaaggtcattgtgtatagctcggtcttcgatgatgtgatggatgtc
ttagcagaatggggatctctctatgtgctgacgaaagatgggaagatccacgtgtttcag
aagaaggatactcagcccaaactagaggcgttggatttggaaaagtctgtagcgatggag
aacctgacaccaaggaacggtcaggaagaaaatggcctgaaaaaacaagttatccgagtg
ggcaccagaaagagtcagctggcccggattcagacagacagtgtagtggaaatgctccgc
aaacgatacctccaccttcattttgagattgttgccatgtcaacaactggagacaagatc
ttggacaccgctctttccaagattggagaaaagagcctcttcaccaaggagctggaaaat
gcacttgaaagaaatgaagttgacctggttgttcactcgttgaaggatctgccaacttca
ctcccacctggcttcaccattggggccatctgcaaaagggaaaacccccatgatgctgtc
atttttcatcccaagcacaatgggaaaacactcaacaaccttcctgaaaagagtgtggtt
ggaaccagttcacttcggcgagcagctcaactcaaaaggcggttccctcagctggaattc
agggatatcagaggaaatttaaacacccgcttgaaaaagctggatgagaaggaggacttc
agtgccataattctggctgccgctggtctgaggaggatgggatgggagaatcgtattggt
cagatcctaaaccctgaagattgcctttatgctgttgggcagggtgccttagcagtggag
gtccgagctaaggatcaagatatactggatatggtatctgtcctaaatgatgaggaaaca
gtgctatgttgcattgctgagagagcctttatgagacacctggagggtggatgtagtgtt
cctgtagcagtcaatactatgctgaaagatgcccagttgtatttgacaggagctgtgtac
agcttggatggatcagatagtctgaaggacacgatgcagactgctattaactactcacag
cagaatgaagagggagccaatgatgatacacagtatgttggcatcacagccacgaacgtt
cctcctcatgctcaagaggctgcagagaacctgggtgttgaactagcaagcttactgctg
agcaagggtgctaagcgtattctcagtgttgcaaggcagctcaatgatgcccaataa
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