Carettochelys insculpta (pitted-shelled turtle): 142001499
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Entry
142001499 CDS
T11194
Symbol
DDX6
Name
(RefSeq) putative ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142001499 (DDX6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciz03019
]
142001499 (DDX6)
03036 Chromosome and associated proteins [BR:
ciz03036
]
142001499 (DDX6)
Enzymes [BR:
ciz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142001499 (DDX6)
Messenger RNA biogenesis [BR:
ciz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
142001499 (DDX6)
mRNA degradation factors
5'-3' decay
Decapping complex
142001499 (DDX6)
Chromosome and associated proteins [BR:
ciz03036
]
Eukaryotic type
Gene silencing
piRNA pathway
142001499 (DDX6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
142001499
NCBI-ProteinID:
XP_074832881
LinkDB
All DBs
Position
25:complement(482908..516017)
Genome browser
AA seq
483 aa
AA seq
DB search
MSTARTENPVIMGLSSQNGQLRGPVKPSTGPGGGGTQTQQQMNQLKNTNTINNGTQQQAQ
SMTTAIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHV
QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHTEPVDD
EKP
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggccagaacagaaaaccctgttataatgggtctatccagtcagaatgggcag
ctgagaggtccggtaaaaccaagtacaggtccaggaggtggggggacacagactcagcaa
cagatgaaccagctgaaaaacaccaacacaattaataatggcactcaacagcaagcgcag
agtatgaccacggctattaaacctggtgatgactggaagaagactttaaaactccctcca
aaggatctgagaatcaaaacttcggatgtgacctccacaaaaggaaatgagtttgaagat
tattgtctgaaacgggagttactgatgggaatttttgaaatgggctgggaaaaaccatct
cctattcaggaggagagtattcccattgctttatctggtagagatatcttggctagagct
aaaaatggaacgggcaagagtggagcctacctcattcccttacttgaacgtctagactta
aagaaggacaatatacaggcaatggtgatcgttcccactcgagaactagcactgcaggtc
agtcagatctgtatccaggttagcaaacacatgggaggtgccaaagtgatggcaacaaca
ggcggtaccaatctgcgtgatgatataatgaggcttgatgatacagtgcatgtggtgata
gctacccctgggagaattttggatctcatcaagaaaggagtagcaaaagttgaacatgtc
cagatgatagtactggatgaggcagataagttgctttctcaagattttgttcaaataatg
gaagacattattctaacgctacctaaaaacaggcagattttgctctactcagccactttc
cctcttagtgtacagaagttcatgaattcccatttgcagaaaccctatgagattaacctg
atggaggaactgactttgaagggagttacccagtactatgcctatgtaactgagcggcag
aaagtacactgcctcaatacgctattttcccggctccagattaaccagtcaatcattttc
tgcaactcttcacaacgggttgaactgctagccaagaagatctcccagctgggctattcc
tgcttttacatccatgctaaaatgaggcaggaacaccgtaatcgtgtattccacgatttc
cgaaatggcttatgccggaatcttgtttgcactgatttgtttacccgaggtattgatatc
caagctgtgaatgtggtgataaactttgattttccaaagctggcagagacgtatctccat
cgtattgggagatcaggtcgttttggtcacctgggtctggccatcaacttgatcacctat
gatgatcgattcaacctgaaaagtattgaggagcaattgggaactgaaattaaacccatt
ccaagcaacattgacaaaagcctgtatgtggcagaataccacactgaacctgtagatgat
gagaaaccttaa
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