Carettochelys insculpta (pitted-shelled turtle): 142002302
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Entry
142002302 CDS
T11194
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03013
Nucleocytoplasmic transport
ciz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
142002302 (UPF1)
03015 mRNA surveillance pathway
142002302 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciz03019
]
142002302 (UPF1)
Enzymes [BR:
ciz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
142002302 (UPF1)
5.6.2.5 RNA 5'-3' helicase
142002302 (UPF1)
Messenger RNA biogenesis [BR:
ciz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
142002302 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
142002302 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
142002302
NCBI-ProteinID:
XP_074834406
LinkDB
All DBs
Position
27:complement(15310374..15342343)
Genome browser
AA seq
1114 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGHGGQGPPGQ
GPPGQIEPQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCG
IHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCG
CRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPS
EQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFG
PLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYK
GDLAPLWKGIGHVIKVPDSSADYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQ
SALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQ
RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRL
CAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAER
ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHC
QLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNG
VTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAG
AKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRA
NEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLN
NLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHD
QIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPATGRGTPKGKTGRGGRQKNR
FGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLG
DEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagactctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacccagggctccgagttcgagttcaccgacttcactctc
cccagccagacccagaccccgcccgggcccgggcacggcgggcaggggccgccggggcag
gggcctcccggacagatcgagccacaggttaatggtcctgatgggattctccagaatggt
gcagtggatgataatgtagcaaaaaccagccaattgcttgcagaattaaattttgaagaa
gatgaagaagatacctattacaccaaggatcttcctgtgcatgcttgcagttactgtggt
atccatgacccagcttgtgtggtttactgcaataccagcaagaagtggttctgtaatgga
cgtggaaatacatctggcagccacattgtaaatcatcttgtgagagcaaagtgtaaagaa
gtgactcttcacaaagatggccctttgggagaaactgttttggaatgttataattgtgga
tgtcgtaacgtgttcctcctcggtttcattccagcaaaggctgactcagtagttgtatta
ctgtgcaggcaaccgtgtgccagtcaaagcagtttaaaggatattaattgggacagctca
cagtggcaacctcttatccaggaccgctgttttctttcttggctggtaaagattccttct
gaacaggagcaattgagagcccgccagattacagctcaacagattaacaaactggaagaa
ctttggaaggaaaatccatctgcaactcttgaagacttggaaaaaccaggtgtcgatgag
gaaccacagcatgtcttacttagatatgaggatgcttatcaataccaaaatatttttgga
cctctggttaagcttgaagcagattatgacaagaaactcaaggagtcacagacccaagat
aacatcacagtgagatgggacctgggcttgaacaagaagagaattgcttacttcactttg
ccaaagactgattcagacatgcgtctcatgcagggagatgaaatctgcctgagatataag
ggagacctggcacctttgtggaaaggaattggtcatgttattaaagttcctgatagctct
gcagattatggtgatgagatagctattgagctgaggagcagtgtgggggcacctgtggaa
gttactcataatttccaggtggattttgtgtggaaatctacttcatttgacagaatgcag
agtgctttaaaaacatttgcagtggatgaaacttcggtgtctggctacatttaccacaaa
ctgttgggtcacgaggtagaagatgtgattattaaatgccagctgccaaagcgttttact
gcgcaaggacttcctgacctcaaccattctcaggtttatgctgtaaagacggtcttgcag
cgtcctctgagccttatccaaggcccccctggtacaggaaaaactgtgacatcagccact
attgtctaccatttagctaggcagggcaatgggcctgtgttagtttgtgccccaagtaac
atagctgtggatcagctcactgaaaagatccatcagacgggactaaaagttgttcgtcta
tgtgctaaaagtcgcgaggcaattgattctcctgtatctttcttggcattgcacaaccag
atcagaaacatggatagtatgcctgagctccagaaactgcagcagctcaaagatgaaact
ggagaattgtcatctgctgatgagaaacgctatcgtgcactgaaacgaacagcagagcgt
gaattgcttatgaatgcagatgttatttgctgcacatgtgtgggagcaggagatccaaga
cttgcaaaaatgcagtttcgttccattttaattgatgaaagcacacaggctactgaacca
gaatgtatggtgccggttgttctgggagccaaacagctgatcctcgtaggtgatcactgt
cagctgggtcctgttgtgatgtgtaaaaaagctgcgaaggcaggcctgtctcagtctctc
tttgagaggcttgtggtattgggtatccgtccaattcgcctgcaagtgcagtatcgtatg
catcctgcacttagtgcttttccatccaacatcttctatgaggggtcgctccagaatgga
gttactgcagcggaccgtgtgaaaaagggattcgatttccagtggccccagccagataaa
ccaatgtttttctatgtgacacagggtcaagaagaaattgccagttcaggcacctcttac
ttaaacaggacggaagctgctaatgtggagaagataactacaaagttattgaaagctggt
gccaaacctgaccagattggcatcattaccccctatgaaggccagcgctcttacctggtg
cagtacatgcagtttagtggttccttgcatacaaaactctatcaggaggtagaaattgca
agtgttgatgctttccaaggacgagagaaggactttattatcctttcttgtgtaagagcc
aatgagcaccaaggaattggatttttaaatgatcccagacgtcttaatgtggctctcacc
agagcaagatacggagtaattatagtcgggaacccaaaagctctgtctaaacaaccactt
tggaatcacttgctgaactactataaagagcagaaggtactcgtagaaggaccactgaac
aatctccgagaaagccttatgcagttcagcaagccccgtaagcttgtcaataccatcaat
ccaggtgctcgtttcatgacaactgccatgtatgatgcacgtgaggctattatcccagga
tcggtctatgaccggagcagtcaaggacgcccttccaacatgtacttccaaacccatgat
cagattgggatgataagtgctggcccgagccatgtcactgcgatgaacattcctatccct
ttcaaccttgtgatgccaccgatgccaccaccaggatattttggacaggctaatggaccg
gccacaggacgtgggacacctaaaggaaagactggtcgtggtggccgccagaaaaatcgt
tttgggattcctggaactagccagtcaaaccttccaaacagtcaagcaagccaagatgtg
gtgtcccaaccattctcccaggggccattgactcagggctatatctccatgagtcagcca
tctcagatgagccagccaggactctcccagccagaattatcacaggacagttaccttggt
gatgagttcaaatcacagattgatgtggcgctgtcacaggactctacttaccagggggaa
cgtgcatatcaacatggtggagtgacgggactgtcacagtattag
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