Carettochelys insculpta (pitted-shelled turtle): 142002537
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Entry
142002537 CDS
T11194
Symbol
DHX8
Name
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142002537 (DHX8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ciz03041
]
142002537 (DHX8)
Enzymes [BR:
ciz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
142002537 (DHX8)
Spliceosome [BR:
ciz03041
]
Complex C
Other components
Step II factors
142002537 (DHX8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
GIPC1_GH2
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
AAA_16
T2SSE
nSTAND_NTPase5
PhoH
TsaE
Sigma54_activ_2
OB_RRP5_4th
Cas3-like_C_2
Transformer
Motif
Other DBs
NCBI-GeneID:
142002537
NCBI-ProteinID:
XP_074834815
LinkDB
All DBs
Position
28:6933810..6956436
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AA seq
1195 aa
AA seq
DB search
MGEPAVAEELAKLEYLSLVSKVCTELDNHLGINDKDLAEFVINLAEKNTTFDTFKTALIK
NGAEFTDSLISNLLRLIQTMRPPAKPSTDKAEAVARPKTEKEKLKDLFPALCRPDNPTVR
TMLDEDDVKVAVDALKELEALMPSAGGQEKQRNTDHRAKRKRRSRSHSRDRDRKRRHRSR
SRSRSRTRDKNKGRSRYRSRSRSVSPSRDRKAREKHSEKSNDRWRDKHVDRPPPEEPSIG
EIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVNKGQRVKVKVLS
FTGSKTSLSMKDVDQDTGEDLNPNRRRNLVGETNEETSMRNPDRPSHLSLVNAPEVEDDS
LERKRLTRISDPEKWEIKQMIAANVLSKEEFPDFDEETGILPKVDDEEDEDLEIELVEEE
PPFLRGHTKQSMDMSPIKIVKNPDGSLSQAAMMQSALAKERRELKQAQREAEMDSIPMGL
NTHWVDPLPDVDGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQLSIIEQRESL
PIFRLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMS
VAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLSQYAIIMLD
EAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVE
ILYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVP
ELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVY
NSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNL
ASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPL
EPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTL
LAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKATVRVQK
AICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREV
TTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgggggaacccgccgtcgccgaggagctcgcgaagctcgagtacctgtcgctggtgtcc
aaggtctgcaccgagctggacaatcacctgggcatcaacgacaaggacctggcggagttt
gtgataaatctcgccgagaagaacactacgtttgacacattcaagactgcccttataaag
aatggcgctgagttcacagactccctcattagtaatttgttacgtctcatacagacaatg
cggcctccagcaaagccatctacagacaaagcagaggcagttgccagacccaaaacggaa
aaggaaaagctgaaggacctgtttccagccctttgcaggccggacaaccccactgtcagg
actatgctggatgaagatgatgtgaaagtggccgttgatgctcttaaagaacttgaagca
ttaatgcctagtgcaggtgggcaggaaaaacaaaggaatactgaccaccgggcaaaaaga
aagaggaggagccgcagtcacagcagagacagggacaggaaacggaggcaccgatcccgt
tccaggtcccgttctaggactcgggataagaacaaggggagatccagataccgctcaagg
agcaggagtgtgagtcccagcagggaccgtaaggctcgagagaaacactcagagaagagc
aatgacagatggagggacaagcatgtggatcggcccccacctgaagagccttcaattgga
gaaatttacaatggcaaagtcacaagcataatgcagtttgggtgctttgtgcagctggaa
ggactaaggaaacgctgggaaggtttggttcatatttctgagcttcgcagagagggacgt
gttgctaatgttgctgatgttgtgaacaaagggcaaagagtgaaggttaaagtgctgtcc
tttactggatccaaaaccagcctcagcatgaaggatgttgatcaagatacaggggaagac
ttgaacccaaaccgacgcagaaacctggttggcgagaccaacgaagagacctcgatgagg
aatccagacaggcccagtcatctctctctggttaatgctcctgaagtggaagatgatagc
cttgaacggaaacgtctcactcggatttcagacccggagaaatgggaaatcaaacagatg
attgcagctaacgttctctccaaagaagagtttcctgactttgatgaggagactggaatc
ctccccaaagtcgatgatgaagaagatgaggaccttgagattgagctggttgaagaagag
ccaccattcctgcgagggcatacgaagcaaagcatggatatgagtcccattaaaatagtg
aagaatcctgatggctcattgtcccaggctgcaatgatgcaaagtgctttagccaaagaa
aggcgagaactcaaacaagctcaaagggaagcagagatggactctattcctatgggactt
aatacacactgggtggatcctttacctgacgtggatggaagacagatagctgcaaacatg
cggggtattgggatgatgcccaatgatatcccagagtggaagaaacatgcatttggaggc
aacaaagcctcctatggtaaaaaaacccaactctctatcattgagcagagggagagtctc
ccaatcttcagactaaaggagcagctgattcaggccgttcatgacaatcaaatcctgatt
gttattggcgagacgggctctgggaaaacgacacagatcacccagtacctggctgaggca
ggctacacgtcgagaggaaagattggatgcacccagcctcgccgagtggctgcaatgtct
gttgccaagagagtgtcggaggagtttggttgctgtttagggcaagaggttggctacacc
attcgatttgaagactgcaccagccccgagaccgttatcaaatacatgaccgacggtatg
ttactccgggagtgcctgattgatcctgacctgagccagtatgccatcatcatgctggac
gaggcccatgagaggactattcacactgatgtgctcttcgggcttttgaaaaagacagtg
cagaaacgtcaggatatgaagctgattgtaacttcggcgacattagatgccgtgaagttt
tcccagtacttctacgaagctccaatcttcacgattcccggcagaacataccctgtggaa
attctgtacacaaaagagccagagactgattatctggatgctagtctgatcacagtgatg
cagatccatctgacagagccaccaggtgacatcctagtgttcctgacgggtcaggaggag
attgatacagcctgcgagatcctctatgagagaatgaaatctctagggcccgatgtgccg
gagttaataatcctccctgtgtactcagcgttgcctagtgagatgcagaccaggatcttt
gacccagccccaccaggcagcaggaaggttgtcattgctaccaatattgctgagacctcc
ctgactattgatggaatctattatgtggtggatcctgggtttgtgaagcagaaagtttat
aactccaagacgggaattgatcagctggtggttacgccaatttctcaggcacaggcaaag
cagcgggcaggaagagctgggagaacagggccagggaagtgttacagactctacacagag
cgtgcttaccgagatgaaatgctaaccaccaatgtgcctgaaatccagagaacaaacttg
gccagcacagtgctctccctgaaggctatggggatcaatgacttgctgtcctttgatttt
atggatgctccccccatggaaacactcatcactgccatggaacagctctacaccttggga
gccctggacgatgaggggctgctcactcgactcgggcgccgaatggcagagttccccttg
gagcccatgttatgtaagatgttgatcatgtctgtacatttgggatgtagtgaggaaatg
ttaaccattgtctctatgctgtccgtacagaacgtgttctacaggccaaaggataaacaa
gcactagctgaccagaagaaagccaagtttcaccagacagaaggggatcacctcactctg
ctggctgtctacaattcctggaagaataataagttctcaaatccctggtgctatgagaac
tttatccaggcccggtccttgcgcagggcccaggacatccgtaaacaaatgctgggcatt
atggacaggcacaagcttgatgtggtgtcatgcggaaaggcgacggtgcgagtccagaag
gccatttgcagcggtttcttccgaaacgcagcaaagaaggaccctcaagagggctaccgg
acactcattgaccagcaggtggtctatattcacccatccagcgccctcttcaacaggcag
ccagaatgggttgtctatcatgagctagtgctgaccaccaaggagtatatgcgtgaagtg
accaccattgacccgcgctggctggtggaatttgccccagccttcttcaaagtttctgat
ccaaccaaactgagcaaacagaagaagcagcagcgtctggagcccctgtacaatcgctac
gaggagcccaatgcctggagaatctctcgtgcattcaggagacgctga
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