Carettochelys insculpta (pitted-shelled turtle): 142002673
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Entry
142002673 CDS
T11194
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ciz
Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142002673 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ciz03041
]
142002673 (DDX42)
Enzymes [BR:
ciz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142002673 (DDX42)
Spliceosome [BR:
ciz03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
142002673 (DDX42)
Complex B
142002673 (DDX42)
Complex C
U2 SnRNP specific factors
142002673 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
DUF4238
Motif
Other DBs
NCBI-GeneID:
142002673
NCBI-ProteinID:
XP_074835064
LinkDB
All DBs
Position
28:complement(8334200..8369317)
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AA seq
990 aa
AA seq
DB search
MEEHLLSMHHREDNMIKRSKDTADIMNWNKGGPGTKRGFGFGGFAIASGKKEEPKLPQQS
HSAFGTAGSSASFGKSAPPQLPSFYKIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAEN
SPTRQQFNSKSADSDSEDDPLEAFMAEVEDQAARDMKRLEDKDKERKNSKGIRDDIEEED
DQEAYFRYMAENPNAGVVQEEEEDNLEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEK
NFYDEHEEITSLTPQQIVELRHKLNLRVSGAAPPRPASSFAHFGFDEQLMHQIRKSEYTQ
PTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPT
RELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKA
TNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILID
PIRVVQGDIGEANEDITQIVEILPSGPSKWNWLTRHLVEFTSSGSVLLFVTKKANAEELA
NNLKQEDHNLGLLHGDMDQSERNKVISDFKKKGIPILVATDVAARGLDIPSIKTVINYDV
ARDIDTHTHRIGRTGRAGEKGIAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQN
AWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSDGSDRGNSNVMSNYEAYKPSTGAMGDR
LSAMKAAFQSQYKSHFVAASLNNQKTGSSAAGASGWTSAGSLNSVPTNSAQQNAASPDNS
IATAAVKGIPGFTSSGSLSSVPGFPNVGIQGYNSTNANISNREGGGGGGGGGGGGGSGGS
GRERYVDNRSNRHSDSQRHGDGGGRHSDSQRHGDGGGRHNDGYRHGDNRHGDSHRHSESR
HSSGGSNSSRHGDGRVVGEGRVVGDGRVVGDGRSNGDGRNMGDGRNMGDGRSNNESRISE
NRKDGSNRDSKTDGFAVPEPPKRKKSRWDS
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggaagagcatctcctgtcaatgcaccacagagaagacaacatgataaaaaggtctaaa
gatactgctgacatcatgaactggaacaaaggtggacctggcaccaaaagaggctttggt
tttggaggatttgccatagcctctggaaagaaagaagaaccaaaactccctcaacagtcc
catagtgcttttggaacagctggctcttcagcttcatttgggaagtcagcaccacctcag
ctcccttctttctacaaaattgggtcaaagcgagcaaattttgatgaggagaatgcatat
tttgaggatgaagaggaagattccagcaatgttgatttgccatacattcctgcagagaat
tcccctactcgccagcagtttaattccaaatcagcagactctgacagtgaagatgatccc
ttggaagcattcatggctgaagtggaggatcaagcagctcgagacatgaagagacttgaa
gacaaagacaaggaaagaaagaattcaaagggtattcgagatgacattgaagaggaagat
gatcaagaagcttattttcgctacatggcagaaaaccctaatgctggtgtggtgcaagaa
gaagaagaggataacttggaatatgatagtgatgggaacccaattgcaccatccaaaaaa
atcattgatcctcttccacctattgatcattcagagattgaataccctccatttgagaag
aacttctatgatgaacatgaggaaatcaccagcctcaccccacagcagatagtggaacta
cgacataaattgaatctacgggtctctggtgcagcacccccaagacctgccagtagtttt
gctcattttggatttgatgaacagcttatgcatcaaattcggaaatctgagtatacccag
cccactcctatacaatgtcagggtgttccagttgcactgagtggcagagatatgattggc
atagctaagactggcagtggtaaaactgcagccttcatctggccaatgttaatccacatc
atggatcaaaaggagttggagccaggagatggtcccattgcagtgattgtgtgcccaacc
agagagctttgccaacagatccatgctgaatgtaaacgctttggtaaagcatataacctg
cgctctgtagcagtgtatggaggaggaagtatgtgggagcaagccaaagctctgcaggaa
ggggcagagatagttgtctgtacaccaggtcgcttgattgatcatgtgaagaagaaagct
accaatcttcaaagagtctcttatcttgtgtttgatgaagcagatagaatgtttgacatg
ggttttgaataccaggtcagatcaattgccagccatgtgcgccctgacagacaaactctc
ttgttcagtgccacttttcgtaaaaagattgagaagttggccagagatatcctgatcgac
ccgattcgagtggtgcagggagacattggagaggcaaatgaagatattacccaaattgtg
gagattctcccctctggccctagcaagtggaactggttaaccaggcacctggtggagttc
acttcttctgggagcgttctcctctttgtcaccaagaaagcaaatgcagaggagctagcc
aataatcttaagcaggaggatcataatctagggctgcttcatggtgatatggaccagagc
gaaaggaataaagtcatttcagactttaagaaaaaggggatcccaattctggttgctact
gacgtggcagctcgtggtctggatattccttctattaagactgtgattaattatgatgtg
gcccgtgacatagacacccacacacacagaattggacgtactggcagggctggtgagaag
ggaatagcttacactttactgacacccaaggatagtaattttgctggtgatcttgtcaga
aatttggaaggcgccaatcaacatgtttcaaaagaactcttggaccttgcaatgcagaat
gcctggttccgaaaatcccgtttcaaaggaggaaaaggcaagaagctgaacattggcggt
ggtggcttgggataccgcgagcgcccaggcctgggttcggatggctctgatcgcgggaac
agcaatgtgatgagtaactatgaggcatacaagccatccactggggcaatgggagacaga
ttatcagcaatgaaagcagcgtttcagtcacagtacaagagccactttgttgctgccagc
ttaaacaaccagaagactggtagctctgctgctggggccagcggttggaccagcgctggg
agcttgaattcagtaccaacaaattcagcacagcagaatgctgcaagtcctgacaattcg
attgccactgctgcagtaaaggggatcccaggtttcaccagctctgggagcctgagcagt
gtacctggctttccaaatgtaggaattcagggatataatagcacaaatgccaacatcagc
aatcgagaaggaggaggaggaggaggaggaggtggtggtggtggtggtagtggcggcagc
ggcagagaacgatacgttgataaccgaagcaatcgccacagtgacagtcagcgccatgga
gacggtggtgggcgccacagtgacagtcagcgccatggagacggtggtgggcgccacaat
gatggctaccgccatggagacaaccgccatggagacagccaccgccacagtgaaagccga
cattctagtggtggaagcaacagtagccgacatggagacggccgcgttgtgggagagggc
cgcgttgtgggagacggccgcgttgtgggagacggccgcagtaatggtgatggccgcaat
atgggtgacggccgcaatatgggtgatggtaggagcaacaacgagagtagaatcagtgaa
aacaggaaagatggcagcaatcgggacagcaagacagatggttttgctgtccctgagcca
ccaaagcgcaagaagagccgatgggacagttag
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