Carettochelys insculpta (pitted-shelled turtle): 142003148
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Entry
142003148 CDS
T11194
Symbol
SMARCC2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
142003148 (SMARCC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ciz03021
]
142003148 (SMARCC2)
03036 Chromosome and associated proteins [BR:
ciz03036
]
142003148 (SMARCC2)
Transcription machinery [BR:
ciz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
142003148 (SMARCC2)
Chromosome and associated proteins [BR:
ciz03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
142003148 (SMARCC2)
PBAF complex
142003148 (SMARCC2)
GBAF(ncBAF) complex
142003148 (SMARCC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
BRCT_2
TPR_24
CD99L2
Motif
Other DBs
NCBI-GeneID:
142003148
NCBI-ProteinID:
XP_074835951
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All DBs
Position
29:14770265..14788199
Genome browser
AA seq
1204 aa
AA seq
DB search
MAVRKKDGGPNVKYYEAADTVGQFDSARLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLARPNIFLHPDIEPKLLSKLKDIIKRHQGTVTEDRNNASHVVFP
VPSNLEEEEWVRPVMKRDKQVLLHWGYFPDSYDTWIPASEIEAAVEDAPTPEKPRKVHAK
WILDTDTFNEWMNEEDYEVTDEKSPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
RSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKIVS
TKKDSESAPVKGGTMTDLDEPEDESMETAGKDEEENSAGNKGEQAKNPDLHEDNVTEQTH
HIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLT
STACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSGLV
PLQPKTPQGRQSDADAKAGRKSKEIEDLVPEAVKGKPELQTSASQQMLSFPDKGKEKPTD
LQNFGLRTDMYSKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGSRT
QDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASA
AAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPERI
EESGTDETRAESQPSEEKKELKEPREGPTEDDVKEKLSEGPKKEEEKGKEGDSEKESEKG
DGDSVAELEKEKDPREGQEEVPKDLAEAEAERKTKVERDIGEGNLSTAAAAALAAAAVKA
KHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQA
FHMEQLKYAEMRARQQHFQQMHQQQQQPQPLPSAGAPLAPTAHSMPAAQAQGMPTTPSLA
QSEQMGQAVPAAPHTVPAQTTAGPHVQPPFPGQPPSSQLLPGTVGASTHPGVPGNLPAAL
PFGMPPSVPFSMASTVADTISINLPANPPAHPLHGNLPCSMLAPPNLPAAVPSAGPPSML
TTSGPPLALPHVSGLASAAAQSPAIVAAMQGSLLPNAALAPDQGPSLQADPIPPSTATPV
PPTQ
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaggacggcggccccaacgtcaagtactacgaggccgcggacacg
gtggggcagttcgacagcgcgcggctctggctgggcaagaactacaagaagtacattcag
gcggagcctcccaccaacaagtccctctccagcctggtggtgcagctgctgcagttccag
gaggaggttttcggcaaacacgtcagcaacgcgccactcaccaagttgcctataaaatgc
ttcttggatttcaaagctggaggctccctgtgccacatccttgccgcagcctataagttc
aagagcgaccaaggatggcggcgtttcgatttccagaacccttcgcggatggatcgcaac
gtggaaatgttcatgaccatcgagaaatccttggtgcagaacaactgcctggcccggcct
aacatcttcctgcacccagacatcgagcccaagctgctgagcaagctgaaagacattatc
aagcggcaccaggggacagtcaccgaggacaggaacaacgcctcccatgtcgtcttccct
gtccccagcaacctggaggaggaagagtgggtccgacctgtcatgaagagagacaagcag
gtccttctgcactggggctacttcccggacagctatgacacctggatcccagccagcgaa
atcgaagctgctgttgaggatgcgcccactcctgagaagccgcggaaggtccatgccaag
tggatcctcgacacagacaccttcaacgagtggatgaacgaagaggactacgaggtgact
gacgagaagagccccgtctctcgcaggaagaagatctctgccaagacactaacggatgaa
gtgaacagccccgactcggaccggcgggacaagaagggcgggaactacaagaagaggaag
cgctcaccgtcccccaccccggaagccaagaagaagaacgccaagaaaggcccatcgacc
ccctacaccaagtcgaagcgtggccaccgtgaggaggagcaggaggacctgacgaaggac
atggacgagccctcccccgtgcccaacgtggaggaggtcacactgccgaaaatagtgagc
accaagaaggactcggagtctgcgcctgtgaagggcggcaccatgaccgacctggacgag
ccagaggacgagagcatggagaccgccggcaaggacgaggaggagaacagtgcagggaac
aaaggggagcaggccaaaaacccggatctgcacgaggacaatgtgacggagcagactcac
cacatcatcatccccagctacgccgcctggttcgactacaacagcgtccacgccatcgag
cgcagagccctgcctgagttcttcaatggcaagaacaaatccaagacccccgagatatac
ctggcttatcgcaacttcatgattgacacctaccggctcaacccccaggagtacctgacc
tcgaccgcctgccgcaggaatctggctggggatgtctgcgccatcatgcgggtccatgcc
ttcctggagcagtgggggctgatcaactatcaggtggatgcggagagccggccgaccccc
atgggcccccctcccacgtcgcacttccatgttctggccgacaccccctccgggctggtg
ccactgcagcccaagacgccccaggggcgccagagtgatgcagacgcaaaggctggccgc
aagagcaaagaaatcgaggacctggtcccagaggcggtgaaggggaagcctgagctgcag
acctcggcctcccagcagatgctcagcttccctgacaagggcaaggagaagcccacggac
ctgcagaacttcggcctgcgcacggacatgtacagcaaaaagaacgtcccctccaagagc
aaagccgctgccagcgccacgcgggagtggacggagcaggagacgctgctgctgctggag
gccctggagatgtacaaggacgactggaacaaggtgtcggagcatgtgggcagccgcacc
caggacgagtgtatcctgcacttcctgcgcctgcccatcgaggacccctacctggaggac
tcggaggcctcgcttgggcccctggcctaccagcccatccccttcagccagtcaggcaac
cccgtcatgagcaccgtggcctttctggcctccgtcgtggacccccgcgtggcctcggca
gccgccaagtcagcactcgaggagttctccaagatgaaggaggaagtgcccacggcgctg
gtggaagctcatgtccgcaaggtggaggaggcagccaaggtgacgggcaaggcagacccg
gcctttgggctggagagcagcgggatcgcggggaccacgtctgacgagccagagagaatc
gaggagagcggcactgacgagacacgggccgaatctcagccctcggaggagaagaaggag
ctgaaggagccccgagaaggccccacagaggacgacgtgaaggagaagctgagcgagggc
cccaagaaggaggaggagaaaggcaaagagggcgacagcgagaaggagtcggagaagggc
gacggggacagcgtggccgagctggagaaggagaaggatccccgggagggccaggaggag
gtgcccaaggacttggccgaggccgaggctgagaggaagaccaaggtggagagagacatc
ggcgaagggaacctgtccaccgcagccgctgctgccctggctgctgctgctgtgaaagcc
aagcacctggctgcggtggaggagcgcaagatcaagtccctggtggccctgctggtggag
acccagatgaagaagctggagatcaagctgcgccacttcgaggagctggagaccatcatg
gaccgggagcgagaggcgctggagtaccagaggcagcagctcctggccgacagacaggcc
ttccacatggagcagctcaagtacgccgagatgcgcgcccggcagcagcacttccagcag
atgcaccagcagcagcagcagccccagcccctcccgtccgccggggctcccctagcgcca
actgcccactccatgccagcggcccaggcccaggggatgccgactacgcccagcctggct
cagtcagagcagatgggccaggcggtaccggccgcaccgcacacagtaccggctcaaacc
actgccggccctcatgtccagcctccgttccccggccagccgccctcctcccagctgctt
cccgggacggtcggcgccagcactcaccccggcgtgcccggtaatctcccggcggccctg
ccttttggaatgcctccgtccgtcccatttagcatggctagtactgtagcagacaccatc
agtattaacctccctgctaacccgcccgctcatccactgcatggtaacctcccgtgcagc
atgctggccccacctaacctgcccgccgccgtgcctagcgctgggccccctagcatgctg
acgacctccggaccgccgctcgctctgccgcatgtctcgggactggcctcggcagctgcc
cagagccccgccattgtggcggccatgcagggcagtctgcttccgaacgccgccctcgca
ccagaccagggtccctctctgcaggcggaccccatcccacccagcacggccaccccggtc
ccacccacccagtga
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integrated database retrieval system
