Carettochelys insculpta (pitted-shelled turtle): 142003156
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Entry
142003156 CDS
T11194
Symbol
ATG4D
Name
(RefSeq) cysteine protease ATG4D isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz04136
Autophagy - other
ciz04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
142003156 (ATG4D)
04136 Autophagy - other
142003156 (ATG4D)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ciz01002
]
142003156 (ATG4D)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ciz04131
]
142003156 (ATG4D)
03029 Mitochondrial biogenesis [BR:
ciz03029
]
142003156 (ATG4D)
Peptidases and inhibitors [BR:
ciz01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
142003156 (ATG4D)
Membrane trafficking [BR:
ciz04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
142003156 (ATG4D)
Mitochondrial biogenesis [BR:
ciz03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
142003156 (ATG4D)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
YIEGIA_cap
Motif
Other DBs
NCBI-GeneID:
142003156
NCBI-ProteinID:
XP_074835965
LinkDB
All DBs
Position
29:1281757..1288908
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AA seq
486 aa
AA seq
DB search
MSSVSPASVRYVGQDELRHAEGRTLFSPRAGSQDGSCNGLVPGGARSGQPSEPDEVDKIK
SKLLSAWNNVKYGWAVKTKTNFSKQSPAYLFGHVYRFEVEEDVELFQKDFASRVWFTYRR
EFQQLEGTLWTTDCGWGCMLRSGQMILAQGLLVHFLGRNWTWPNALFTPSLVEAEPMKPG
SPSRPAGTSLQLPADRGQVPWGIWALPRPLSPQELEKEHQHRTIVSWFADHPRAPFSIHR
LVELGRSSGKKAGDWYGPSITAHIVRKAVEGCSQAGGLAVYVAQDCTVYKGDVVRLMSGS
DSRTLPDPGAQQRAVIILVPMRLGGETLNPVYVDCVKELLKLELCIGIIGGKPKHSLYFV
GYQDDFLLYLDPHYCQPFVDTTQESFPLESFHCSSPRKMAFSKMDPSCTIGFYARDRQEL
DVLCAELSRVLSSSATKEKYPMFTVAEGHAQEHGLAELCSRFSQQTVQLPRRSKGKKPSS
DEFVFL
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgagttccgtctcgcctgcctcggtgcgctacgtcggccaggacgagctgcgccacgcg
gagggcaggacgctctttagcccccgcgcggggagccaggatgggagctgcaacgggctg
gttcccgggggggcgcggagcggccagcccagcgaacccgacgaggtggacaagatcaag
agcaagctcctctcggcctggaacaacgtgaaatacgggtgggctgtcaagaccaaaacc
aacttcagcaaacagtcccccgcgtacctcttcggccacgtctaccgcttcgaggtggag
gaggatgtggagctgttccagaaggactttgcttcccgtgtctggttcacctaccgccgg
gagttccagcagctggagggcaccctgtggaccacggactgcggctggggctgcatgctg
cgcagcgggcagatgatcctggcccaggggctgctcgtgcatttcctcggcaggaactgg
acctggcccaacgccttgttcacccccagcctggtggaggcagagcccatgaaacctggc
tctccctcccgtcctgctggcaccagcctgcagctgcctgcagacagaggccaggtcccc
tgggggatctgggccctgccacgccccttgagcccgcaggagctggagaaggagcaccag
caccgcaccatcgtttcctggttcgccgatcatccgcgggcgcccttcagcatccacagg
ctggtggagctcgggaggagctcagggaagaaagccggggactggtacggcccctccatc
actgcccacatagtcaggaaagctgtcgaaggctgttcacaagccggtggcctggctgtc
tacgtggctcaggattgcaccgtgtacaagggggacgtggtgaggctgatgtctgggagc
gacagccggaccctgccggatcccggtgcccagcagagagctgtcatcatcctggtgccc
atgcgcttgggtggggagaccctcaaccccgtctatgtggactgtgtgaaggagcttctg
aagctggagctgtgcattgggatcatcggcgggaagccgaagcactcgctgtacttcgtg
ggctaccaagatgactttctgctgtacctggacccccactactgccagccctttgtggac
accacccaggagagcttccccctggagtccttccactgcagctcgccccgcaaaatggcc
ttcagcaaaatggatcccagctgcaccatcggcttctatgcccgcgacaggcaggagctg
gacgtgctgtgcgcagagctgagcagggtgctgagctcctcggcgaccaaggagaagtac
cccatgttcacggtggcggagggccacgcgcaggagcacggcctggctgagctgtgctct
cgcttctcccagcagaccgtgcagctccccaggcgcagcaagggcaagaagcccagctcg
gacgagttcgtcttcctgtga
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