KEGG   Carettochelys insculpta (pitted-shelled turtle): 142003377
Entry
142003377         CDS       T11194                                 
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
  KO
K19719  collagen type II alpha
Organism
ciz  Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz04510  Focal adhesion
ciz04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:ciz00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    142003377 (COL2A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    142003377 (COL2A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:ciz00536]
    142003377 (COL2A1)
Glycosaminoglycan binding proteins [BR:ciz00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   142003377 (COL2A1)
SSDB
Motif
Pfam: Collagen COLFI VWC
Other DBs
NCBI-GeneID: 142003377
NCBI-ProteinID: XP_074836373
LinkDB
Position
29:complement(11574941..11649712)
AA seq 1490 aa
MGRSVHSRTVLLLAASQLILLAVVRCQEEDIQEAGSCVEDGQRYSDKDVWKPEPCRICVC
DTGTILCDEIICEEMKDCPSPEIPFGECCPICPTDQPAVSGQPGPKGQKGEPGDIKEVVG
PRGPPGPQGPVGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEPGEPGTAG
PMGPRGPPGPPGKPGDDGEAGKPGKAGERGSPGPQGARGFPGTPGLPGVKGHRGYPGLDG
AKGEAGAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPG
PVGPSGAPGFPGGPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGAPGNPGTDGIPG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGDPGVAGFKGEQGPKGETGPAG
PQGAPGPAGEEGKRGARGEPGAAGPIGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPAG
LGGPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGVRG
QPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
SPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGTPGLVGPRGERGFPGERGTPGSQGLQG
PRGLPGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEG
APGKDGGRGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGDRGEPGAPGPAGFAG
PPGADGQPGAKGEQGESGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGPPGPPGASGKDGPKGARGDGGPPGRAGDPGLQGPAGPPGEKG
ESGEDGPPGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGAGDRG
PPGPVGPPGLTGPPGEPGREGTPGSDGPPGRDGAAGVKGDRGETGPVGSPGAPGPPGSTG
PVGPTGKQGDRGDSGPQGPMGPAGPAGARGMPGPQGPRGDKGEAGEAGERGLKGHRGFTG
LQGLPGPPGPSGDQGATGPSGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGETG
PAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQVEKGPDPMRYMRADEASSDLRQHDVEVDA
TLKSLNNQIESIRSPEGSKKNPARTCRDLKLCHPDWKSGDYWIDPNQGCTLDAIKVFCNM
ETGETCVYPKPSSIPKKNWWTSKTKEKKHIWFGETINGGFHFSYGDDNLAPNTANIQMTF
LRLLSTEGSQNLTYHCKNSIAYMDEASGNLKKAILIQGSNDVEIRAEGNSRFTYSALADG
CTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGADQEFGVDIGPVCFL
NT seq 4473 nt   +upstreamnt  +downstreamnt
atgggccgctctgtgcattcgaggactgtcctgctgcttgcagccagccagctcatctta
ttagcagtggtcagatgtcaggaggaggatatccaggaggcaggcagctgtgtggaggat
gggcagaggtatagtgataaggatgtgtggaaacccgaaccctgccggatctgtgtctgt
gacacggggaccatcctctgcgacgagataatctgcgaagaaatgaaagactgtcccagc
cctgagatccccttcggagaatgctgccctatctgcccaactgaccaacctgctgtcagc
gggcaacctggccccaagggacaaaaaggggaacctggtgatattaaagaagttgtagga
ccaagagggccacccggaccacagggacccgtaggggaacaaggaccaagaggagaccgt
ggggataaaggagaaaaaggtgctcctggccctcggggtagagatggcgaacctggtacc
cctggaaaccccggacccccagggcccccgggtcctccagggccccctgggcttggtgga
aactttgctgctcagatggcagggggctttgacgagaaggccggtggcgctcagatgggt
gtgatgcagggacctatgggacctatgggaccgcgaggccctccaggaccatcaggagct
cctggccctcaaggatttcaaggcaaccctggagagcctggggagcccggcactgcaggt
ccaatgggtccccgagggcctcccggaccaccaggaaaacctggcgatgatggggaagca
gggaaacctggcaaagctggtgaacgcggatctcctggccctcagggtgctcgtggtttc
ccaggaaccccggggctcccaggagtcaaagggcaccgaggctaccctgggttagatgga
gccaaaggagaggcgggagctccaggtgctaagggtgaatctggatcaccgggtgagaat
ggttctccgggtcctatggggcctcgtggtctcccaggtgaaagaggacgtcccggccca
tccggtgctgctggtgctcgcgggaatgatggtctcccaggcccggccggcccccctgga
cccgttggcccttctggagctcctggtttccccggcggcccaggctctaagggagaagcc
ggccccactggtgctcgtggtcctgagggtgcccaaggcccccgaggcgaatctggcact
cctggctcccccggaccttcaggagcacctggtaaccctggaactgacggcatccctggc
gctaaaggatcagctggtgctcctggaattgctggtgcccccggcttccctggtccacgg
gggccgcctggacctcaaggtgcaactgggcctctgggtcccaaaggtcagacgggagac
cctggcgtcgcaggcttcaagggcgaacaagggcccaaaggtgaaacgggccctgcaggg
ccgcagggagcacccggcccagctggcgaagaaggcaagagaggagcccgtggggagccc
ggcgcagctgggcccattgggccccctggagagagaggatcccctggaaaccgcggcttc
ccaggtcaggatggtctggccgggcccaagggtgcccctggcgagcgtggtcctgccggc
cttggcgggcccaaaggagccactggtgatcccggacgtcctggagaacccggtctgccc
ggcgccaggggtctcactggccgcccgggtgatgctggtcctcaaggcaaggtcggccct
tcgggcgctcctggtgaggacggccgccccggcccgcctggcccacaaggtgttcgcggg
cagcccggcgtcatggggttcccagggcctaagggagccaacggcgaacccggtaaagct
ggagagaagggactgcctggtgcccctggtctgagaggtcttcctggcaaagatggtgag
actggagctgctggcccaccaggacctgccgggcctgctggagagagaggtgagcagggc
tctccaggcccttctggcttccagggcctccctggccccccaggccctccaggtgaaggt
ggcaagccaggagatcagggtgtccccggtgaagctggcacccctggcctcgtgggtccc
aggggtgaacgcggcttcccaggtgaacgtggcactccaggctcccaaggtctccagggc
cctcgagggctgcccggaactcctggcaccgatgggcccaagggtgcaactggtcctgcc
ggcccaaatggtgcccaaggtcccccaggtctgcaggggatgccaggcgagaggggagca
gctggtattgctggaccaaagggagacaggggtgacgttggtgagaaaggcccagaaggg
gctcccggcaaggatggcggaagaggtttgacaggtccaatcggtccccccggccccgct
ggtcccaacggcgagaagggtgaatcgggtcccccaggaccatctggtgctgctggcgcc
cgcggtgccccgggtgatcgtggtgaacctggagcccctggccctgcaggatttgctgga
cctcccggcgctgatggccaacccggcgcaaaaggtgaacaaggagaatctggccagaag
ggagatgctggagccccgggcccacagggcccttccggtgcccctggcccacagggtccc
actggtgtgactggtcctaagggagctcgaggtgcacagggaccaccgggagctaccgga
ttccccggcgctgcaggacgtgtcggccctcctggccctaacggtaacccaggcccacct
ggcccaccaggtgcttctggcaaagatggtcccaagggtgcccgtggtgatgggggcccc
ccaggccgtgctggtgaccctggtctccaaggccctgccggtccccctggtgagaaggga
gagtctggagaagatggcccacctggtcccgatgggccacctggtcctcagggtttggct
gggcagcgaggtattgttggtcttcccggccagcgcggtgaaagaggcttcccagggctg
cccggcccctcgggtgaacctggcaaacaaggagcccctggaggtgctggtgacagagga
ccacctggtcctgtgggtcccccaggtctgactggtcctcccggtgaacctggacgcgag
ggcacccctggatctgacggcccccctggcagagatggggcagctggtgtgaagggtgat
cgaggtgagactggtccggttggttctcctggtgctcctggccctcctggctccacgggt
cctgttgggccaactggcaaacagggagacagaggagactctggcccacaaggacccatg
ggtcccgccggccctgcaggcgcacgtggcatgccgggtcctcagggtcctcgcggagac
aagggtgaagctggagaggctggcgagagaggtctgaagggtcaccgaggcttcactggt
ctgcagggtcttccaggacctcccggtccatctggagatcaaggtgctactggtccttct
ggtccttctggtcccaggggtcccccaggccctgttggtccctctggcaaagatggttcg
aacggcatgcctggtcccattggtcctcctggtcctcgcggtcgtagtggcgaaactgga
cctgctggtccccctggaaaccctggcccccctggaccacccggccccccaggtcctggc
attgacatgtcagcctttgctgggttgggccaggttgagaaaggtcctgaccccatgcgc
tacatgcgagctgacgaggcctctagtgacctgcgccaacatgacgtcgaggtcgatgcc
actctgaaatccctcaacaaccagatcgaaagcatccgcagccccgagggctccaagaag
aaccccgcccggacctgccgtgaccttaaactctgccaccccgactggaagagcggcgac
tactggatcgaccctaaccagggctgtaccttggatgccattaaggttttctgtaacatg
gagactggagaaacatgtgtgtatcccaaaccatccagcattcccaagaagaactggtgg
accagcaagaccaaggagaagaagcatatctggtttggagaaaccatcaacggtggtttc
cactttagctatggagatgacaacctggcccctaacactgccaacatccagatgaccttc
ctgcgcctcctgtccactgaaggctcccagaacctcacctaccactgcaagaacagcatt
gcttacatggacgaggcatctggcaacctgaagaaagccatcctgatacagggatccaat
gatgttgagatcagagccgaaggcaacagcagattcacatacagtgccttggcagatggc
tgcacgaaacacactggcaaatggggcaagactgtcattgaataccgatcacagaagacc
tcacgcctgcccatcattgatattgcacctatggacattggtggcgctgatcaggagttt
ggtgttgacatcgggccagtctgcttcctgtaa

DBGET integrated database retrieval system