Carettochelys insculpta (pitted-shelled turtle): 142004352
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Entry
142004352 CDS
T11194
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142004352 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ciz03041
]
142004352 (SNRNP200)
Enzymes [BR:
ciz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
142004352 (SNRNP200)
Spliceosome [BR:
ciz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
142004352 (SNRNP200)
Complex C
U5 SnRNP specific factors
142004352 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Terminase_6N
Motif
Other DBs
NCBI-GeneID:
142004352
NCBI-ProteinID:
XP_074838047
LinkDB
All DBs
Position
31:14967691..15003523
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVRDEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKRDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMESDPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETLDLDQGGEALAPRQVLDLEDLVFAQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLVSVDKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINIDGTINVDNFKIIY
IAPMRSLVQEMVGSFGKRLVTYGINVAELTGDHQLCKEEINATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLESLVARAIRNIEMTQEDVRLVGLSATLPNYED
VATFLRVDPVKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEVVLGNVQNAKDAVNWLGYSYLYIRMLRSPSLYGLSHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNETMQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTMHKYVHLFPKLELSVHLQPITRSTLKV
ELAITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNAEGRCVYIT
PMEALAEQVFLDWYEKFQERLGKKVVLLTGETSTDLKLLGKGNIILSTPEKWDILSRRWK
QRKNVQNVSLFLVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGCNISHTQTRLLSMAKPVYHAIMKHSPKKPVV
VFVPSRKQTRLTAIDILTTCASDVQRQRFLHCTEKDLGPYLDKLNDGTLKETLLNGVGYL
HEGLTAMERRIVEQLFGSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFDAEI
VTKTIENKQDAVDYLTWTFLYRRMAQNPNYYNLQGVSHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDTLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTLEHIKRCTDKGVE
SIFDIMEMEDEDRNGLLQLSDSQIADVARFCNRYPNIELSYEVVEKEGIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDSKSNSLISIKRLTLQQKAKVKLDFVAPAPG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAESDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtgaccgcgcggagcctgcagtacgagtacaaagcgaactctaatcttgta
cttcaagctgatcgctccttgatcgataggacccggcgagatgagcctacaggggaggtc
ctctccttggttgggaagctggagggcactcgcatgggtgacaaggctcaaagaaccaaa
ccgcagatgcaggaagagagacgagcaaagaggagaaagcgtgatgaagacagacatgat
atcaacaaaatgaagggttatacgctgctctctgagggcattgacgagatggtgggaatc
atatacaaaccaaaaaccaaggagacccgagagacctatgaggtgctgttaagtttcatt
caggcagctcttggagaccagccacgtgacattctctgtggagctgctgatgaggtcttg
gcggtgttgaagaacgagaaactgcgagacaaagagaggcggaaggaaattgatttgctg
ttagggcagacggatgacacccgctatcatgtgctggtgaacttgggcaaaaagatcaca
gactacggtggtgacaaggagatccagaacatggatgataacatcgatgaaacatatggt
gtgaacgtgcagtttgagtcggatgaagaggaaggcgatgaggacgtgtatggtgaagtg
cgggacgaggcatctgatgatgacatggagggagatgaggctgttgtccgctgcaccctc
tcggccaatcttgtggcgtcgggtgagctgatgagctccaagaagagagacctgcatccc
cgagacattgatgccttctggcttcagcggcagctgagtcgcttctatgacgatgccatt
gtgtcccagaagaaagcagatgaggtgctggagatcttaaagacggccagcgacgacagg
gagtgcgaaaaccagcttgtcctgcttctgggcttcaacaccttcgacttcattaaagtg
ctgcggcagcaccgaatgatgatcctgtactgcaccttgctggccagcgcgcagagcgaa
gccgagaaggagaggatcatggggaagatggaatctgatcccgagctgtcaaagttcctg
taccagctgcacgagacggagaaggaggatctgattcgggaggagcgctcccgcagggag
cgtgtgcgccagtcccgcatggacaccgacctggaaaccctggatctggatcagggagga
gaggctctggccccacgccaggtgttggacttggaggatctggtgtttgcccagggcagc
cacttcatggcaaacaagcggtgccagctgcccgacggctccttccgcaggcagcgcaaa
ggctacgaggaggtgcacgtgccagccctgaagccaaagcccttcggctcggaggagcaa
ctggtgtcggtggacaaactgcccaaatatgcccaggctggctttgagggcttcaaaacg
ctgaaccggattcagagcaagctctaccgagctgcacttgagacagatgagaacctgtta
ctctgcgctcccacgggcgcagggaagaccaacgtggcgctgatgtgtatgctgcgcgag
atcgggaagcacatcaacatcgacggaaccatcaatgtggacaacttcaaaatcatctac
attgcccccatgaggtccctggtgcaggagatggtgggcagctttgggaagcgcctggta
acctacggcatcaatgtggcagagctgaccggagaccaccagctgtgcaaggaagagatc
aacgctacccagatcatcgtctgcacgcctgagaaatgggacatcatcacccgcaaggga
ggggagcggacctacacgcagctggtgcgcctcattatcctggacgagatccacctgctg
catgacgaccggggtcctgtcctggagtccctggtggccagggccatccgcaacattgag
atgacccaggaggatgtgaggctcgttggcctgagcgccactctcccgaactatgaggac
gtggccacgttcctgagagtggaccctgtcaaaggcctattctacttcgacaacagcttt
cgcccggtccccctggagcagacctacgtggggatcaccgagaagaaagccatcaagcgc
ttccagattatgaatgagattgtctacgagaagattatggagcacgctgggaagaaccag
gtgctggtgttcgtccactccaggaaggagacggggaaaactgcccgagccatccgggac
atgtgtctggagaaggatacgctggggctcttcctgcgggagggctctgcctccaccgag
gtcctgcggacggaggctgagcagtgcaagaatctggagctgaaagacctgctgccgtac
ggctttgccattcaccacgctgggatgacgagggtcgatcgaacgctggtggaggatctc
ttcgctgacaagcacattcaggtcctggtctccacagcgacgctggcctggggcgttaac
cttcctgctcacactgtcatcatcaaagggacgcaggtgtacagcccggagaaaggccgc
tggaccgagctgggggctttggacatcctgcagatgcttggccgtgctgggagaccccag
tatgacaccaagggcgaggggatcctcatcacatcccacggagagctgcagtattacctc
tccctgctcaaccagcagctccccatagagagtcagatggtgtccaaactgccagacatg
ctgaatgcagaggtcgtgctggggaacgtccagaatgcaaaggacgcggtgaactggctg
ggctactcctacctgtacatccgcatgctgcgctccccatccctctacgggctctcgcac
gacgacctgaagggagacccgctgctggaccagcgccgcctggacttggtccacactgca
gcgctcatgctggacaagaacaacctcgtcaagtacgacaagaagacggggaacttccag
gtgacggagctgggccgcattgccagccactactacatcaccaatgagaccatgcagacc
tacaaccagctgctgaagcccaccctgagcgagatcgagctcttccgcgtcttctcgctc
tcatcggagttcaagaacatcaccgtgcgggaggaggagaagctagagctgcagaagctg
ctggagcgggtccccatccccgtgaaggagagcatcgaggagcctagtgccaagatcaac
gtgctcctgcaggcgtttatctcccagctgaagctggagggctttgctctgatggcggac
atggtgtacgtcacccagtctgccgggcggctgatgcgggccatcttcgagatcgtcctg
aaccggggctgggcacagctcaccgacaagaccttgaacctctgcaagatgatcgacaag
cggatgtggcagtccatgtgccccctgcgccagttcaggaaactgcccgaggaggtggtg
aagaaaatcgagaagaagaatttcccctttgagcgtctctatgacctgaaccacaacgag
ataggagagctcattcggatgcccaagatgggcaagacaatgcacaagtacgttcatctc
ttccccaagctggagctctccgtccatctgcagcccatcaccaggtccacgctgaaagtg
gagctcgccatcacccctgacttccagtgggacgagaaggtgcacggctcctcggaagcc
ttctggatcctggtggaggatgtggacagcgaggtgatcctgcaccacgagtacttcctg
ctgaaagccaagtacgcgcaggacgagcacctcatcacattcttcgtgcccgtcttcgag
cccctgcccccgcagtacttcatccgggtggtctccgaccgctggctgtcctgtgagacg
cagctgcctgtgtccttccggcatctgattctgcccgagaaataccctccgcccacagag
ctcctggacctgcagccgctgcccgtgtccgcgctgcgcaacagcgccttcgagagcctc
taccaggacaagttccccttcttcaaccccatccaaacccaagtgttcaacaccgtctac
aacagcgatgacaacgtgttcgtgggcgcccccacgggcagcggcaagaccatctgcgcc
gagttcgccatcctgcggatgctgctgcagaacgcggaggggcgctgtgtctacatcacc
cccatggaggccctggcagagcaggtcttcctggactggtacgagaagttccaggagcgc
ctggggaagaaggtggtgctgctgacgggggagaccagcaccgacctcaagctgctgggg
aagggcaacatcatcctcagcacgcccgagaagtgggacatcctgtcccggcgctggaag
caacgcaagaacgtccagaacgtcagcctcttcctggtggacgaagtgcacctcatcggg
ggcgagaacgggccggtgctggaggtgatctgctcccggatgcgttacatctcgtcccag
atcgagcggcccatccgcatcgtggccctgagctcctcgctctccaatgccaaggacgtc
gcccactggctgggctgcagcgccacctccaccttcaacttccaccccaatgtgcgccct
gtgcccctggagctgcacatccagggctgcaacatcagccacacgcagacccgcctgctg
tccatggcaaagcccgtctatcacgccatcatgaagcactcgcccaagaagccagtcgtc
gtcttcgtcccgtcccgcaagcagacgcgcctgacggccatcgacatcctcaccacctgt
gcctcggacgtgcagcgccagaggttcctgcactgcacagagaaggacctggggccgtac
ctggacaaactgaatgacggcaccctcaaggagaccctgctgaacggcgtaggctacctg
catgaggggctgacggccatggagcggcgcatcgtggagcagctcttcggctccggtgct
atccaggtggtggtggcctcccggagtctgtgctggggcatgaacgtggcggctcacctg
gtgatcatcatggacacgcagtactacaacggcaagattcacgcgtacgtggactacccc
atctacgacgtgctgcagatggtgggccacgccaaccgccccctgcaggacgacgagggg
cgctgcgtcatcatgtgccagggctccaagaaggacttcttcaagaagttcctgtacgag
ccgctgccggtggagtcgcacctggatcactgcatgcacgaccacttcgacgccgagatc
gtcaccaagaccatcgagaacaagcaggacgccgtggactacctcacctggaccttcctg
taccgccgcatggcccagaaccccaactactacaacctgcaaggggtgtctcaccggcac
ctgtccgaccacctgtccgagctggtggagcagaccctcagtgacctggagcagtccaag
tgcatcagcatcgaggacgagatggacgtggcccccctcaacctggggatgatcgcggcc
tattactacatcaactacaccaccattgagctcttcagcatgtctctgaacgccaagacc
aaggtgcgtgggctgatcgagatcatctccaacgccgccgagtacgagaacatccccatc
aggcaccacgaggacaccctcctgcggcagctggcccagaaagtccctcataagctgaat
aaccccaagttcaacgacccccacgtcaagaccaacctgctgctgcaggctcacctgtcc
cgcatgcagctgagcgcggagctgcaatccgacacggaggagatactcagcaaggcaatc
cgcctgatccaggcctgcgtggatgtcctgtccagcaatggctggctcagcccggccctg
gcagccatggagctggcccagatggtgacccaggccatgtggtcaaaggactcctacctg
aagcagctgccccacttcaccttggagcacatcaagcgctgcacggacaagggagtggag
agcatattcgacatcatggagatggaggacgaggaccgcaatggcctgctgcagctctcg
gactcccagatcgccgacgtggcccggttctgcaaccgctatcccaacatcgagctctcc
tacgaggtggtggagaaggagggcatccgcagcggcggcccagtggtggtgctggtgcag
ctggagcgtgaggaggaggtcactggcccagtcattgctccccttttcccccagaaacga
gaggagggctggtgggtggtgatcggagactccaagtccaacagcctcatctccatcaag
aggctgactctgcagcagaaggctaaggtgaagctggatttcgtggcccctgccccgggc
gcccacaactacaccctgtacttcatgagcgacgcctacatgggctgcgaccaggagtac
aagttcagcgtggacgtgaaggaggctgagagcgacagtgactcggactga
DBGET
integrated database retrieval system
