Carettochelys insculpta (pitted-shelled turtle): 142006423
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Entry
142006423 CDS
T11194
Name
(RefSeq) superkiller complex protein 2-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142006423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciz03019
]
142006423
Enzymes [BR:
ciz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
142006423
Messenger RNA biogenesis [BR:
ciz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
142006423
mRNA degradation factors
3'-5' decay
Ski complex
142006423
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
DUF3516
DUF2695
Motif
Other DBs
NCBI-GeneID:
142006423
NCBI-ProteinID:
XP_074839316
LinkDB
All DBs
Position
Unknown
AA seq
1258 aa
AA seq
DB search
MERMVLPPRGPLELPLSLLEVGCAGRFELLTRPEGPGGDMLPLCTLPHGLPPFAMDLASE
LEQRFLASPEWLPIHHFERAHRGWPREKAVWSLLEMDATPVHSTLQTERDPTTGQILGFR
EALLDNVGLSAKNSLSFQRAPGPPAQALRGSSTNYPFWPGGMDEPSLEQIGTREQLEEEV
DFEKELLTVPLGWKKGVEFKAQGAALQGPSGRLPLGGLLGALDSFQLGDSSDEEQEKKKK
TKGQEKERPPAPTPALQRADSLEELVLKDVASEPPPPAQPVPPEPPQEQWAIPVDISSPV
DDFYKRIPDPAFRWPFELDVFQKQAILHLERRDSLFVAAHTSAGKTVVAEYAIALAQKHM
TRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPDASCLIMTTEILRSMLYNGSDV
IRDLEWVIFDEVHYVNDAERGVVWEEVLIMLPEHVNIILLSATVPNTLEFAAWVGRIKRK
QLYVISTARRPVPLEHHLYTGTSHKSQYELFLLVDARGGFLSKGYYAAVEAKKERTSKHA
QTFGAKQPTQAGAGPGQEKGVWLSLIDTLRKRDQLPVVAFTFSRARCDDNAAALTTVDLT
SSAEKSEVHVFFQKCISRLKGSDRQLPQVLHMVELLKRGIGVHHSGILPILKEVVEMLFS
KGLVKILFATETFAMGVNMPARTVVFDSIRKHDGTGFRDLLPGEYIQMAGRAGRRGLDTT
GMVIVLCKTQVPEMADLHRMMLGRPTQLQSQFRLTYTMILNLLRVEALRVEDMMKRSFCE
FHSRKDSQAHELAIAQLSRRLAAMEEVDTGGQLSDLPEYCQAVQDLQETRRLIQRRVAES
ASGLKALAPGRVVIVQTPVHRNALGVILQVSPDAANRTFTTLVLCEKAPEEGTPGGDTDR
GSPSPEVPFPDDLLLNKLFLPEGPCGHVVEQLGPCDIAVLTGRTLRVNAERILEDVRKRQ
MPRFRHDPPGPSAVQAAQELLRLAEGGARGLPRLDPVGALQLKELEVVEAVVRLRRLEEM
LPSFQCVHSPRFAPQYLRLAERLRLRVELEHRRFLLSDQSLLLLPEYQQRVEVLRALGYV
DAGGAVQLAGRVACEISNHELLLTELVFDNLLTELRPEESVALLSCLVCQGKGPSEPQLP
SVLRQGMERIRAVAERVALLQRDCGLRESVEDFVAQYNFGLVEVVYEWARGMPFAELARL
TETQEGIVVRCIQRLEETCRDVRNAARIIGEPTLYAKMEQASSLIKRDIVFAASLYTQ
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atggagagaatggtgctgcccccccgggggcccctggagctgccgctgtccctgctggaa
gtgggctgcgctgggcgctttgagctcctcacccgccccgaggggcccggtggggacatg
ctgcctctctgcacgctgccccacggcctgccccccttcgccatggacctggcctccgag
ctggagcagcgcttcctggccagccccgagtggctgcccatccaccactttgagagggcc
cacaggggctggccccgggagaaggccgtgtggtcgctgctggagatggacgccacccct
gtgcactccacgctgcagacggagcgggaccccaccacggggcagatcctgggcttcaga
gaggcgctgctggacaacgtggggctgtcggccaagaactcgctctccttccagcgcgcg
ccggggccccccgcccaggccctgcggggcagcagcaccaactaccccttctggccaggt
gggatggacgagcccagcttagagcagatcggcaccagagagcagctggaagaggaggtc
gacttcgagaaagagctgctgacggtgcccctgggctggaagaagggggtggagttcaaa
gcgcaaggggcggccctgcagggcccatcgggacggctgcccctgggcgggctgctgggg
gcgctggactccttccagctcggcgactccagcgacgaagagcaggagaagaagaagaag
acaaaggggcaggagaaggagaggcccccggcccccacccccgccctgcagagggcagac
agcctggaggagctggtgctcaaggatgtggcctctgagccccctccgcccgcccagccc
gtgccccccgagcccccccaggagcagtgggcgattcctgtggatatctcctcacccgtg
gacgacttctacaaacgcattcctgacccggccttccggtggcccttcgagctggacgtg
ttccagaaacaggccatcctgcacctggagcgccgcgactcgctcttcgtagccgcgcac
acctcggccggcaagacggtggtagccgagtacgccattgccctggcccagaagcacatg
accaggaccatctacacctcccccatcaaggctctgtccaaccagaagttccgagacttc
aggaacacctttggggacgtggggctgctcacgggggacgtccagctgcaccccgatgcc
tcctgcctcatcatgaccactgagatcctgcggtcgatgctgtacaatggttcggacgtg
atccgggacctggagtgggtgatctttgacgaggttcattacgtcaacgacgccgagcgc
ggggtggtgtgggaggaggtgctgatcatgctgccggagcacgtgaacatcattctgctg
agcgccaccgtgcccaacacgctggagttcgccgcctgggtggggcggatcaagcggaag
cagctgtacgtgatcagcacggcccggcgcccggtgcccctggagcaccacctgtacacg
ggcaccagccacaagtcccagtacgagctcttcctgctggtggacgcccgcggcggcttc
ctctccaaggggtactacgcggcggtggaggccaagaaggagcgaaccagcaaacacgcc
cagaccttcggggccaagcagcccacgcaggcgggggccgggccgggccaggagaagggg
gtgtggctgtcgctcatcgacacgctgcggaagcgggaccagctgccggtcgtggccttc
accttctcccgcgcccggtgcgacgacaacgccgccgccctcaccaccgtggacctgacc
agcagcgccgagaagagcgaggtgcacgtcttcttccagaagtgcatctcccgcctcaag
ggctccgaccgccagctgccccaggtgctgcacatggtggagctgctgaagcgcggcatc
ggggtgcaccacagcggcatcctgcccatcctcaaggaggtggtggaaatgctcttcagc
aaggggctggtcaagatcctgtttgccacggagacctttgccatgggggtgaacatgccg
gcccgcaccgtggttttcgactccatccgcaagcacgacggcaccggcttccgtgacctg
ctgccaggcgagtacatccagatggcaggccgggccgggcgccgggggctggacaccacc
gggatggtcattgtgctctgcaagacccaggtgcccgagatggccgacctgcaccgcatg
atgctggggaggccgacgcagctgcagtcccagttccgcctgacgtacaccatgatcctg
aacctgctgcgggtggaggctctgcgcgtggaggacatgatgaaacgcagcttctgcgag
ttccacagccgcaaggacagccaggcccacgagctggccatcgcccagctcagccgccgg
ctggccgccatggaggaggtggacacgggggggcagctcagtgacctgcccgagtactgc
caggccgtgcaggacctgcaggaaacacgtcgtctcattcagcggcgggtggcggagtcg
gccagcggactgaaggctctggcgcccggccgcgtggtgatcgtccagaccccggtgcac
cgcaatgccctgggggtgatcctacaggtctcccccgacgcagccaaccggactttcacc
accctggtgctttgcgagaaggcccccgaggaggggaccccgggtggggacacagacagg
ggcagccccagcccagaggtgcccttccccgacgacctgctgctcaacaagctcttcctg
cctgaagggccctgcggtcacgtggtggagcagctggggccgtgcgacatcgcggtgctg
acaggccggacgctgcgggtcaatgccgagcgcatcctggaggatgtccggaagcggcag
atgccgcggttcaggcacgacccccccgggccctcggccgtgcaggcggcgcaggagctg
ctgcggctggcggaggggggcgccagggggctgccccgcctggacccggtgggcgcgctg
cagctgaaggagctggaggtggtggaggctgtcgtgcggctgcggcgcctggaggagatg
ctgcccagcttccagtgtgtgcacagcccccgcttcgccccccagtacctgcgactggcc
gagcggctgcggctgcgggtggagctggagcacagacggttcctgctatcggaccaatcc
ctgctgctgctgccggagtaccagcagcgggtcgaggtgctgcgggcgctgggctacgtg
gacgccgggggcgcggtgcagctggccgggcgcgtggcctgcgagatcagcaaccacgag
ctgctgctgacggagctggtgttcgacaacctgctgacggagctgcggccggaggagagc
gtggccctgctcagctgcctggtgtgccagggcaagggccccagcgagccccagctgccc
agcgtgctgcgccagggcatggagcggatccgggcggtggccgagcgcgtcgccctgctg
cagcgggactgcggcctgcgcgagtcggtggaggacttcgtggcgcagtacaacttcggc
ctggtggaggtggtgtacgagtgggcccgtggcatgcccttcgccgagctggcccggctg
acggagacgcaggaggggatcgtggtgcgctgcatccagcggctggaggagacctgccgg
gacgtgcgcaatgcggcccgcatcatcggcgagcccacgctctacgccaagatggagcag
gcctccagcctcatcaagagggacatcgtcttcgccgccagcctctacacccagtga
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integrated database retrieval system
