Carettochelys insculpta (pitted-shelled turtle): 142008173
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Entry
142008173 CDS
T11194
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
142008173 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ciz03021
]
142008173 (SMARCC1)
03036 Chromosome and associated proteins [BR:
ciz03036
]
142008173 (SMARCC1)
Transcription machinery [BR:
ciz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
142008173 (SMARCC1)
Chromosome and associated proteins [BR:
ciz03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
142008173 (SMARCC1)
PBAF complex
142008173 (SMARCC1)
GBAF(ncBAF) complex
142008173 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
DUF919
SpeFL
BRCT_2
Motif
Other DBs
NCBI-GeneID:
142008173
NCBI-ProteinID:
XP_074841336
LinkDB
All DBs
Position
2:274468167..274621321
Genome browser
AA seq
1124 aa
AA seq
DB search
MRGGRRVGGARPRWRRSARVTMAAAVTAGGGPGPGAAAGLATLSVARRKDGGPTGKFWES
PETVSQLDAVRVWLGKHYKKYVQADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLP
AKCFMDFKAGGTLCHILGAAYKYKNEQGWRSTFPGHNRRRFDLQNPSRMDRNVEMFMNIE
KTLMQNNCLSRPTIYLIPDIELKLANKLKDIVKRHQGTITDEKAKATHHIYPNPTSLDDD
EWLRPVMKKDKQVLVHWGFYPDSYDTWVHASDIDAEIEDAPIPEKPWKVHARWILDTDIF
NEWMNEEDYEVDENKKPVSFRQRISMKNEEPVRSPERRDRKAAASTRKRKHSPSPPPTPV
ESRKKTGKKGQAGLYGKRRGQKEEDEQDDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSEN
TPVKGGTVADLDEQDEETVATGGKEDEDPNKGDQSRSIDPGEDNVTEQTNHIIIPSYASW
FDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTG
DVCAVMRVHAFLEQWGLVNYQVDPESRPMAMGPPPTPHFNVLADTPSGLMPLHLRAPQVP
AAQQMLSFPEKNKEKPTDLQNFGLRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEM
YKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMS
TVAFLASVVDPRVASAAAKAALEEFSRVREEVPLELVEAHVKKVQEAARTSGKVDPTYGL
ESSCIAGTGPDEPEKLDGVEEEKMETETDGQPSEKVENKGESEMEDRDKVQEGENERNPE
KEQESEVTADTKSEEKEAEENKENVDACKDKESEAGKKKVEHEISEGNVATAAAAALASA
ATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLT
ERQNFHMEQLKYAELRARQQMEQQHSQNTQQSHQHSSGPGMNPLGTPGHPGMLPHQQPPP
YPMIHHQMPPPHPPQPGQMPGPGSMIPGQAMPARMMPSVSANIHSASGGPPPSGMPPMSG
NIIGPRVPLAAPNGMYPPPSQQPPPPADGVTPPPAGTTPAAAAP
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggcggcaggcgagtgggaggcgcaaggccgcggtggcggcgctcggcgagggta
acaatggcagcggcagtgactgcaggtggcgggcccggccccggggcggcggcggggcta
gcgacactgtcggtagcgcggcggaaggacggcggccccacgggcaagttctgggagagc
ccggagacggtgtcccagctggacgcggtgcgggtctggctggggaagcactacaagaag
tatgttcaggcagatgctcctaccaataaaacattggctgggctggtggtgcagctgctg
cagttccaggaagatgcctttggaaagcatgtcaccaaccctgccttcaccaaacttcct
gccaagtgcttcatggatttcaaagctggaggtaccttatgtcatattcttggtgctgct
tacaagtataagaatgaacagggctggagaagtacctttcctggtcataataggcgaagg
tttgatttgcagaatccatcaagaatggatcgaaatgtggagatgttcatgaacattgaa
aaaacactaatgcagaataattgtctgagcaggccaacaatctacctcattccagatatc
gaactcaagttggctaacaagctaaaggacattgtcaaacgtcatcagggaaccatcact
gatgagaaggcaaaggccacccaccatatttatcctaatcctacctcactggatgatgat
gaatggttgagacctgtgatgaagaaagataagcaggtgttagtgcactggggcttttat
ccggacagctatgatacttgggttcatgctagtgacattgatgctgaaattgaagatgct
ccaattccagaaaaaccatggaaggtgcatgccagatggattctggatacagatatattc
aatgaatggatgaatgaagaggattatgaggtggatgagaacaagaagccagtgagtttt
cgccagcgaatctcaatgaagaatgaagagcctgtgcgtagccctgagagaagagacagg
aaggcagcagcaagtaccaggaaaagaaagcattcaccttcccctcctcccacaccagtg
gaatccagaaaaaagactgggaagaaaggacaagcagggctgtatgggaaaaggcgaggt
cagaaagaagaggatgagcaagatgatcttaccaaggatatggaagacccaacacctgta
ccgaacatagaggaagtggtacttcccaaaaatgtgaacccaaagaaagacagtgaaaac
acgccagtgaaaggaggaacggtagcagacctagatgagcaagatgaggagacagtggct
acaggaggaaaggaagatgaagatcccaacaaaggtgatcagagtcgatccatcgaccca
ggtgaagataatgtcacagaacagaccaaccacatcattattccaagctatgcatcatgg
tttgactacaactgtattcatgttattgagcgtcgtgctcttccagaattcttcaatggg
aaaaacaagtccaagactccagaaatatacctggcttatcgtaacttcatgattgataca
tatcgcttaaaccctcaggagtacttgaccagcactgcctgcagaaggaaccttactggg
gatgtatgtgctgtaatgagagtacatgcctttctggagcagtggggtctagttaactac
caagttgatccggaaagccgtcctatggcaatgggccctcctcctactcctcatttcaat
gtgcttgcggataccccttctggacttatgcctctccatctccgagctccccaggtcccc
gctgcccagcagatgctgagttttcctgagaaaaacaaagaaaagcctactgacctgcag
aacttcggacttcgcacagacatttactcaaagaaaaccttggcaaagagtaagggagcc
agcgctggaagggaatggacagagcaagagacgctgctgctactggaggctctggagatg
tacaaagatgactggaataaagtctctgagcatgttggaagtcgcacccaggatgaatgc
attctccactttctgagacttcccatagaagatccttatttggagaactctgatgcatct
ctaggccccttagcttatcagcctgtacctttcagccagtctggaaacccggtgatgagc
actgttgcttttttggcatctgtggtagatcctcgggtggcatctgctgcagctaaagct
gctttagaggaattttctcgggttcgagaggaggtaccactggaactagttgaagcccat
gtcaagaaagtgcaagaagcagcaagaacctctggaaaggtggatccaacatacggatta
gagagcagctgtattgctggcacaggtccagatgagccagagaagcttgatggcgttgaa
gaagaaaaaatggaaaccgagacagatggacaaccgtcagaaaaggttgaaaacaaagga
gaaagtgagatggaggaccgagataaggtacaagaaggagaaaatgagagaaatccagaa
aaggagcaggagagtgaagtcactgctgataccaagtcagaagagaaggaggcagaagag
aacaaggaaaacgttgatgcgtgcaaagacaaagaaagcgaagctgggaagaagaaagtg
gaacatgaaatctctgaaggaaatgtagctacagctgcagctgctgctcttgcctcagct
gccaccaaagcaaagcatctagcagcagtggaagagcggaagataaagtccttggtcgct
ctcctggtggaaacacaaatgaagaaactggagatcaaacttcgtcattttgaagagctg
gaaacaatcatggacagagaaaaagaggcattagaacagcagaggcagcagctgctgaca
gagcgacagaacttccacatggaacagctgaaatatgcagaattaagggcccgccagcaa
atggagcagcagcacagtcagaacacacaacaatcacaccagcattccagtgggcctggc
atgaacccacttgggacaccaggtcatccaggcatgctgcctcatcagcagcctcctcca
taccctatgatacaccaccaaatgcccccgcctcatccaccacaaccaggacagatgccg
gggccaggttcaatgatacctgggcaggccatgccggcccgaatgatgccatctgtctca
gccaacatccactcagccagcggtggccctcccccatctggcatgccaccaatgtcggga
aacataattggacctcgtgttcccctagcagctccaaatggcatgtatccccctccatca
cagcagccaccaccgccagctgatggagtgactccgcctccagcaggaacaacaccagct
gcagcagctccctaa
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