Carettochelys insculpta (pitted-shelled turtle): 142009187
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Entry
142009187 CDS
T11194
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03015
mRNA surveillance pathway
ciz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142009187 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
142009187 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciz03019
]
142009187 (PABPC1)
03041 Spliceosome [BR:
ciz03041
]
142009187 (PABPC1)
Messenger RNA biogenesis [BR:
ciz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
142009187 (PABPC1)
mRNA cycle factors
Stress granule specific factors
142009187 (PABPC1)
Spliceosome [BR:
ciz03041
]
Complex C
Other components
Complex C specific factors
142009187 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_10
RRM_5
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
142009187
NCBI-ProteinID:
XP_074842945
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All DBs
Position
2:42582617..42608614
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AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAALPPTQNRA
AYYPTSQLAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSAQ
RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNNPTGVPTV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctccctgtacgtgggggacctgcatccc
gacgtcaccgaggccatgctctacgagaagttcagccccgccgggcccatcctctccatc
cgcgtgtgccgggacatgatcacccgcaggtccctgggctacgcctacgtcaacttccag
cagcccgccgacgctgaacgagctttggatactatgaactttgatgtcattaaaggcaaa
ccagtgcgcatcatgtggtctcaacgtgatccatctctacgcaaaagtggtgtcggaaac
atcttcatcaaaaacttagacaaatcaattgacaacaaagctttgtatgatacattttct
gcttttggaaatatcctctcttgtaaggtggtatgtgatgaaaatgggtccaaaggctat
ggatttgttcattttgagacacaagaagcagcagaaagagctattgaaaaaatgaacggc
atgctgcttaatgatcgcaaagtatttgttggaagatttaaatcccgtaaagagcgagaa
gccgaacttggagctagagcaaaggagttcaccaatgtttacatcaagaattttggagaa
gacatggatgatgaacgacttaaggaactctttggcaagtttgggcctgccttaagtgtg
aaagttatgactgatgagagtggcaaatccaaaggttttggctttgttagctttgagaga
catgaagatgcccaaaaagctgttgatgaaatgaatggaaaggagctcaatggaaagcaa
atttatgttggccgcgctcaaaaaaaagtggaaaggcaaacagagctcaagcgcaaattt
gaacaaatgaagcaggacaggatcaccagataccagggtgtaaacctttacgtgaaaaat
cttgatgatgggattgatgatgagcgtctaagaaaagaattctccccattcggtacaatc
actagtgcaaaggtcatgatggaaggtggccgcagcaaagggtttgggtttgtgtgtttt
tcttcaccagaagaagcaaccaaagctgtcacagaaatgaatggtagaattgtggccact
aaaccattatatgtagctctagcccaacgcaaagaagagcgccaagctcacctcaccaac
caatatatgcagagaatggcaagtgtgagagcagtacctaatcctgtaatcaacccctac
caacctgcacctccttcaggttacttcatggcagctctcccaccgactcagaaccgtgct
gcatattatccaactagccaacttgcccaactcagaccaagtcctcgctggactgctcag
ggtgccagacctcacccattccagaacatgcctggagcgatccgcccagcagctcccaga
ccaccatttagtaccatgagaccagcttcttcacaggttccacgagtcatgtcagcacaa
cgtgttgctaatacatcaacacagacaatgggtccgcgtcctgcagcagctgctgctgcg
gccactcctgctgtacgcacagttccacagtataagtatgctgcaggtgttcgtaaccct
caacaacatcttaacacacagccacaggttgctatgcagcagccagctgtccatgtgcaa
ggtcaggaacccttgactgcttccatgttggcttctgcccctccacaagaacaaaagcag
atgctaggtgaacggctgtttcctcttattcaagccatgcaccctactctggcgggtaaa
atcaccggtatgttgttggagattgacaactctgaactccttcatatgcttgagtctcct
gaatctcttcgttcgaaggttgatgaagctgtagctgtactacaagcccatcaagctaaa
gaagctgcccagaaagcagttaacaatccaactggggttccaactgtttaa
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