KEGG   Carettochelys insculpta (pitted-shelled turtle): 142011035
Entry
142011035         CDS       T11194                                 
Symbol
WDR43
Name
(RefSeq) WD repeat-containing protein 43
  KO
K14546  U3 small nucleolar RNA-associated protein 5
Organism
ciz  Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:ciz00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    142011035 (WDR43)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ciz03009]
    142011035 (WDR43)
Ribosome biogenesis [BR:ciz03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    142011035 (WDR43)
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Utp12 Beta-prop_WDR5 WD40_CDC20-Fz WD40 Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WDR55 ANAPC4_WD40 WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR19_1st Beta-prop_WDR36-Utp21_2nd WDR90_beta-prop_4th Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_SPT8 EIF3I Beta-prop_TEP1_C Beta-prop_Aladin Beta-prop_ACSF4 Beta-prop_WDR75_1st Beta-prop_IFT140_1st Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_RIG_1st Beta-prop_WDR41 DUF6235 WD40_like Methyltrans_Mon_3rd
Other DBs
NCBI-GeneID: 142011035
NCBI-ProteinID: XP_074845926
LinkDB
Position
3:51337740..51387201
AA seq 672 aa
MAAAVTGAACVGDAPWAPCAFSPGGRRSLALCGPDGRLRVWDTPSSRLQHEYVPSAHLSA
ACTCLAWAPPGGRQPPSKEGPQRKKRKSEVAEAGEQLDLLAIGTAVGSILLYSTVKGELQ
SKLDGGHDNKINCVRWHQDNGCLYSCSEDKHIVEWNTQTCKVKCKWKGDNSSVSSLCISP
DGKMLLSAGRTIKLWDLETKEVYRNFTGHATAVSLLTFITVRPPNESQPFDGITGLYFLS
GAARDRLLSVWQIRSDRKEKNAVMSFTVTDEPIFIDLTVSESREEPVKLAVVCRDGQLHL
FEHILNGYCKKPLTSNYTIQIATSGKDSDSTPKPVPILAAAFCSDKQSLLLVYGNTLQPV
IERVSLNSTESHICLIRDIQKTMALQTEMSVTKVKTPVVKKEAKVLVPGIPGHSAAVKSQ
SSGMQKMKSKRKPGDKEDSIEDRLGAMDIDTVKMKTQGGLPQTDSFAVLLVQGLESNDPV
ILNKVLQTRKDALIKNTVSRMPVHAVIPLLHEVTKRLQGHPYSALQMVRWLKSVFTIHAS
YLSTLPDLVPQLGMLYQLMESRVKTLQKLSRLHGKLYLTITQVAALEKNQDVTDVNQTAK
LVYEEESSEDGSEDEMIADKDSDENWDEDDEEKGERLEEEETREQSDEQEMAVEKEINGE
SDLDPENESEEE
NT seq 2019 nt   +upstreamnt  +downstreamnt
atggcggcggcggtgaccggagcagcgtgtgttggggacgccccgtgggccccctgcgcc
ttctccccgggtggccgccgctccctggctctgtgcggccccgacgggcgcctccgggtg
tgggacacgccgagcagccgcctgcagcacgagtacgtgccctccgcccacctcagcgcc
gcctgcacctgcctggcctgggccccgccggggggccgccagcccccgagcaaggaaggg
cctcagaggaaaaaaaggaaatctgaagttgcagaagcaggcgaacagttggatctgttg
gctattggtacagcggttggcagtattttattatacagcacagttaaaggagaattacag
agcaaactagatggtggtcatgacaataaaataaactgtgtacggtggcaccaggacaat
ggttgtttatatagttgttcggaagacaaacacattgtggaatggaacacacagacctgc
aaagtgaagtgcaaatggaaaggtgacaacagcagcgttagctccctgtgcatcagccca
gatggaaagatgctgctttcagctggtcgaacaatcaaactgtgggacctggagaccaag
gaagtctacagaaatttcacaggtcatgcaacagcagtttcattgttaacgttcatcaca
gtacgacctccgaatgaaagtcagccctttgatggaattactgggctctatttcttgtct
ggagcagcacgtgaccggttactcagtgtgtggcagatcagatcagataggaaagaaaag
aatgctgtgatgtcttttactgttacagacgagccaatctttattgacctgacggtgtca
gaaagcagagaggagccggtaaagttagcagttgtgtgtagagatggacagctccattta
tttgaacacattttaaatggctactgcaaaaaacctttaacatcaaattacaccatccag
atagcaacgtctggaaaggacagtgactccacaccgaaaccagtccctattctagcagct
gcattttgctctgacaagcagtcattgctgcttgtgtatggaaacactttacaacccgtc
attgagagagtgtccttgaactccactgaatcccacatatgcttgataagggatattcag
aagaccatggcgcttcaaacagaaatgtctgtaacaaaggtaaaaacacctgttgtgaaa
aaagaagccaaagttctagtgcccggaattcctggacatagtgcagctgtcaaatctcag
tcctctggaatgcagaaaatgaaaagcaaaagaaaacctggagataaagaggatagcatt
gaagaccgtcttggggcaatggatattgatactgtgaaaatgaaaacacaaggtggcctt
ccacaaactgacagctttgcggtgcttttggttcagggcttggaaagtaatgatcctgtt
atcttaaataaagtgcttcaaacaaggaaggatgctttaataaagaacacagtatctaga
atgcctgttcatgctgtcattccattgctgcatgaggttacaaagaggttgcaaggccac
ccatacagtgccttacaaatggtccggtggctgaagtcggttttcactatacatgcatcc
tacctttccacattaccagacctggttcctcagctgggtatgctgtatcagttaatggaa
agcagagtaaaaacattgcagaagctctctcgcctccatggaaaactctatcttaccatc
acccaagttgcagcactggaaaaaaatcaggatgtaactgatgttaatcagactgcaaaa
ctggtgtatgaagaagaatcctctgaagatggttctgaagatgagatgattgcagataaa
gattcggatgagaactgggatgaagatgatgaagagaagggggagcgattagaagaggag
gagacaagggagcaatcagatgaacaagaaatggctgttgaaaaagaaatcaatggagaa
tctgatttggacccagaaaatgaaagtgaagaagaataa

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