Carettochelys insculpta (pitted-shelled turtle): 142011175
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Entry
142011175 CDS
T11194
Symbol
TAF5L
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
142011175 (TAF5L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ciz03021
]
142011175 (TAF5L)
03036 Chromosome and associated proteins [BR:
ciz03036
]
142011175 (TAF5L)
Transcription machinery [BR:
ciz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
142011175 (TAF5L)
Coactivators
SAGA/TFTC/STAGA complex
142011175 (TAF5L)
Chromosome and associated proteins [BR:
ciz03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
142011175 (TAF5L)
STAGA complex
142011175 (TAF5L)
TFTC complex
142011175 (TAF5L)
SAGA complex
142011175 (TAF5L)
SLIK complex
142011175 (TAF5L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
TFIID_NTD2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
PEP5_VPS11_N
PROPPIN
WD_LRWD1
Beta-prop_IP5PC_F
Ge1_WD40
eIF2A
Nbas_N
Mala_s_1-like
Motif
Other DBs
NCBI-GeneID:
142011175
NCBI-ProteinID:
XP_074846290
LinkDB
All DBs
Position
3:complement(78765397..78795894)
Genome browser
AA seq
589 aa
AA seq
DB search
MKRVRTEQIQMAVSCYLKRRQYVDSEGPLKQGLRLCQNAEEMAANLTVQSESGCANVVSA
APCLAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNMVQNGLKSTVDSFY
SRFHGMFLQNASQKDIIEQLQTTLTIQDILSNFKLRAFLDNKYVIRLQEDSYNYLLRYLQ
SDNNNALCKVLTLHIHLDVQPSKRTDYQLYASGSSSRNESNGLETTDMPASILQNEAALD
LLQDSIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISSDSKLLAAGFDNSCVKLWSLRSR
KLKSEPHLVDVSRIHLACDIVDEEEEDDSNVGTEMKILRGHCGPVYSTRFLSDSSGLLSC
SEDMSIRYWDLGTFTNTVLYQGHSYPVWDLDISPWSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLALAFSPNG
KYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSIRVWDIR
NTYCNAPADGSSSELVGVYTGQMNNVLSVQFMACNLLLVTGIAQENQEH
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcgtacgcacagaacagattcagatggcagtgtcctgctacctcaaacgccgt
cagtatgtggactcagagggtcccttaaaacaagggctgaggctgtgtcagaatgctgaa
gagatggcagctaatctcactgtccaatctgaatctggttgtgccaacgtagtgtctgca
gctccctgcctggcagagccacagcaatatgaagtacagtttggtcgattacgcaatttt
ctcacagattcagattcccagcacagccatgaagtgatgcctcttctatatccccttttt
gtctacctccatctgaacatggtccaaaatggcctaaagagcacagtggacagtttctac
agtcgcttccatgggatgttcttgcagaatgccagccagaaagatatcattgagcagctg
cagactaccttgactattcaagacatcctgtccaacttcaagctccgcgcctttctggac
aacaagtacgttatccgccttcaagaagacagctacaactaccttctccgctacctccaa
agtgacaacaacaatgctctttgcaaggttctcaccttgcacattcacctggatgtgcag
ccttccaagaggacggattaccagctctatgccagtggcagctcctcgcgcaatgaaagc
aatggcctggaaacgacagacatgcccgcttccatactgcagaatgaggcagccctggat
ttactgcaggacagcattaagcgagtcaaggatgggcctccttcactcaccaccatatgt
ttctatgccttctataacacagagcagttgctgaacacagcagagatctcgtcggatagc
aagctgcttgctgctgggtttgataattcttgtgtaaagctgtggagcttgcgatccagg
aagttaaaatctgagccccatcttgtagatgtgtcccgaatccacctggcttgtgacatt
gtggatgaggaggaagaagatgacagcaatgtaggtacagaaatgaaaatcctgagagga
cattgtggaccggtgtacagcacaaggttcctatcagacagttcaggacttttatcctgc
tctgaggacatgtccatcagatactgggaccttggaacttttacaaacactgtgttgtac
caagggcattcctaccctgtctgggatttggacatcagtccttggagcctgtacttcgcc
agtggttcccacgaccgcacagcaagactctggtcattcgatcgaacataccccctgcga
atatatgcaggccatttagcagatgtggactgtgtcaaatttcaccccaattccaactat
ttggctacaggatccacagacaaaactgtgcgcttatggagtactcagcaggggaactct
gtgcgcctcttcacaggtcaccgtggccctgtgctagcacttgcattttcccccaatggt
aagtatctggcttcagcaggagaagaccagcggctaaagctgtgggacttggcatctggc
actctttacaaagaactgagggggcatacagataacataaccagccttacttttagcccc
gacagtagtttgattgcctctgcatcaatggacaattctattcgggtttgggacattcgg
aacacatattgcaatgctcctgcagatggttcttccagtgaactggttggtgtatatact
gggcagatgaataatgtactgagcgtccagtttatggcctgtaaccttcttctggtgact
ggaattgcacaagaaaatcaggaacattga
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