Carettochelys insculpta (pitted-shelled turtle): 142012444
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Entry
142012444 CDS
T11194
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03030
DNA replication
ciz03410
Base excision repair
ciz03420
Nucleotide excision repair
ciz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
142012444 (RFC1)
03410 Base excision repair
142012444 (RFC1)
03420 Nucleotide excision repair
142012444 (RFC1)
03430 Mismatch repair
142012444 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ciz03032
]
142012444 (RFC1)
03400 DNA repair and recombination proteins [BR:
ciz03400
]
142012444 (RFC1)
DNA replication proteins [BR:
ciz03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
142012444 (RFC1)
DNA repair and recombination proteins [BR:
ciz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
142012444 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
BRCT_2
Rad17
AAA_14
RuvB_N
AAA_5
nSTAND3
AAA_33
RNA_helicase
TIP49
AAA_7
AAA_18
AAA_16
AAA_19
AAA_17
Motif
Other DBs
NCBI-GeneID:
142012444
NCBI-ProteinID:
XP_074848715
LinkDB
All DBs
Position
4:complement(43249099..43311180)
Genome browser
AA seq
1129 aa
AA seq
DB search
MDIRKFFGVVSAGKKHECETVKKAAKTKNEEETSAGKKKKAKEIKVENSPNEDDSKQKQT
NKKKRIIYDSDSDEERQLVKKSKKQPERKPSSSKPDKVRKQDPVVYVSESDDEDDFINKK
TSQKPRENGTGARKEDAKPQARSKPLSPVKLTPTSVLDYFGTGSVQRSEKKLVASKRKES
SQSKDSLLEDEAIAKQLQLEEDAELERQLHEDEEFARTLAMLDETPKKKKARKDVEETQT
ISTTTTSSNTTEKRKSSDSTDDTRNNRAREQTKSQSTGASCPYPESSVSKAMESVNKTLP
LKPSSKLVALKQKEESNKKDRGSPSAVAKEKITSGKEEKSTPKKQRVSPQKPESISPEDS
EKKRVNYQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVLESIERDEAKSLIER
YGGKVTGNVSKKTSYLIMGRDCGQSKCDKASTLGTKIIDEDGLFDLIRTMPGKKSKYEIA
AEAEAKKAKSKWDRTPQKAEPEKRKISPAKKGTDSRKSYSTPEKGGAFRSLKKETAETQK
GLDFKQQAAEKKHAPKSEETCVPEMSKDKEESLLWVDKYKPTSLKTVIGQQGDQSCANKL
LRWLQNWHKNTPEDKHAKPSKLGGKDDGTNFKAALLSGPPGIGKTTTAVLVCEELGYSYV
ELNASDTRSKNSLKEVVAESLNNTSMKDFCSGVSQSVSMKHVLIMDEVDGMAGNEDRGGI
QELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRLEQIKGAMMSIAFKEGLK
IPAPAMSEIILAANQDIRQVLHNLSMWCTKNKSLTYDEAKADASKAKKDIKLGPFDVVRK
VFAAGEETAHMSLIDKSDLFFHDYSLAPLFVQENYVHVKPVAARGNMKKHLMLLSRAADS
ICDGDLVDRQIRSKQNWNLLPTQAIYSSVLPGELMRGHMSQFPNFPGWLGKFSSTGKHDR
IVQELAMHMSLRTHTSKSAVNTEYLSYLRNALVRPLTNLGTEGVQDAIAFMDSYCLMRED
VENIMEISSWGGNPSPFSKLDPKVKAAFTRVYNKEAHLAPYSLHAVKTSKRQPALASELN
EEVNADEFQSEDDQDTIESDAMIKQKKAKSSKPSKADNREETRKGKGKK
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atggatatcagaaaattctttggggttgtatctgctggcaagaaacatgaatgtgagaca
gtgaaaaaggcagcaaaaaccaaaaatgaggaggagacttcagctgggaagaagaagaaa
gctaaggaaatcaaggtggagaattcacctaatgaagatgattcaaaacaaaagcagaca
aacaagaaaaaaaggataatctatgattcagattcagatgaggagaggcaattggtaaaa
aaatctaagaagcaaccagagagaaaaccatcctcttcaaaacctgataaagttcgtaag
caggatcctgttgtttatgtttcagagtcagatgatgaagatgacttcattaataagaag
acttcccagaaacccagggagaatggaacaggagcaagaaaggaggatgcaaaaccacag
gctagaagtaaacctttatcaccagtaaaattaacgccaacctcagtactcgattacttt
ggaactggtagtgtgcagcgatcagaaaagaaattggtagcaagtaaaagaaaagaatcg
tcacaaagcaaagattcattgctagaagatgaggccattgctaagcaactgcagttagag
gaagatgcggagctagagagacagctgcatgaagatgaagaatttgccagaactctggcc
atgttggatgaaacgccaaagaaaaaaaaggctcgaaaagatgtggaagagacgcaaacc
atttcaactaccacgaccagttcaaacacaacagaaaaacggaaatcttcagactcaaca
gatgacacaaggaataaccgtgcacgggaacaaactaaatctcaaagcacaggagcatcc
tgtccatacccagaatcctccgtcagtaaagcaatggagtctgtgaataagaccttgccg
ttgaaacctagctctaagcttgttgctctgaaacagaaagaagagagcaataaaaaggac
agaggatctcctagtgcagtggcaaaagaaaaaatcacttcaggaaaggaagagaagagt
acaccaaagaaacagagagtttctccccaaaagcctgagtctatcagtccagaggactct
gaaaagaaacgagtcaactaccaggcatatcgaagtttccttaatcgtgagggtccaaaa
gcacttggttccaaagagataccacaaggagctgaaaactgcttggagggcctgacgttc
gtcattacaggagtcctggagtctattgaacgagatgaggccaagtctttaattgaacgt
tatggtggaaaagttactggtaatgtcagcaagaagacaagctatctcattatgggacgt
gactgtggccagtctaagtgtgacaaggcatcaacattagggacaaaaattattgatgag
gatggtctgtttgatctgattcgaactatgccaggcaaaaagtccaaatatgaaatagca
gctgaagcggaggcaaagaaagcaaagtctaaatgggacaggaccccacagaaagctgag
cctgaaaaaagaaaaattagcccagctaagaaagggacggactctagaaaaagctactcc
actccagaaaaaggaggtgccttcagatctctaaaaaaagaaactgctgaaacacagaaa
ggtctggacttcaagcagcaagctgcagagaaaaagcatgcgccaaagtctgaagagact
tgtgttcctgagatgagcaaagacaaagaagagagcttgctgtgggttgataaatataag
cccacatctcttaaaacagtaattggacagcaaggggatcaaagctgtgcaaataagttg
ttacgatggcttcagaattggcacaagaatactcctgaggacaaacacgcaaaacccagt
aaattgggaggcaaagacgatggtactaattttaaagcagctttgctgtcagggccacca
ggaattggtaaaactactacagctgttttagtttgtgaggaactggggtacagctatgtg
gaactgaatgccagtgacactcgcagtaaaaacagtttgaaggaggtggttgctgaatcc
ctaaataacaccagcatgaaagacttctgttctggagtgtctcaatcagttagcatgaaa
catgtactgatcatggatgaagtggatggaatggcagggaatgaagacagaggtggaata
caggagttgattggtctgatcaaacacacaaagattcctatcatctgtatgtgtaatgat
cggaaccatcccaagattcgttccctcgtccattattgttttgatcttcgctttcagaga
cctcggctagaacaaattaagggtgccatgatgtctattgcatttaaagaagggttaaag
atacctgctccagctatgagtgagattattctggcagcaaatcaggacattaggcaggtt
ttacataatcttagtatgtggtgtacaaaaaataaatcattgacttacgatgaggcaaaa
gctgatgccagcaaagccaaaaaggatatcaaactgggcccctttgatgtcgtcaggaag
gtttttgctgctggagaggaaactgctcacatgtctcttatagacaaatctgacttgttc
ttccatgattactctctagcacctctttttgttcaggaaaactatgtgcatgtgaaacct
gttgctgctcgaggtaacatgaaaaaacacttgatgctgctgagcagagcagctgacagc
atatgcgatggtgatctggttgacaggcagattcgcagtaaacaaaactggaaccttctg
cctacacaggccatttattcgagtgttcttccaggggagctgatgagaggtcacatgtcg
cagtttcctaactttccaggctggctggggaaattttcatccacaggcaaacatgaccgg
attgttcaggaactggcaatgcacatgagtctcagaactcacacaagtaagtctgctgta
aacacggagtatttgtcgtacttgcgcaatgcacttgttagacctttgacaaacctggga
acagaaggtgtacaggacgctatagcattcatggactcctactgcttgatgagagaagat
gttgaaaatatcatggaaatatccagctggggaggcaaccctagtcccttttctaaactg
gaccccaaggtcaaagcagcttttacgcgtgtgtataacaaagaggcacatttagcaccg
tattccctgcatgcagtaaagacatctaaacggcagcctgcattggcttcagaactgaat
gaagaggtgaatgctgatgaatttcagtctgaggatgaccaagatactattgaaagtgat
gccatgattaagcaaaaaaaggcgaagtcttccaagccatcaaaggcagacaacagagaa
gaaacaagaaaaggaaaaggaaagaaatga
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integrated database retrieval system
