Carettochelys insculpta (pitted-shelled turtle): 142012728
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Entry
142012728 CDS
T11194
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ciz00536
]
142012728 (COL25A1)
Glycosaminoglycan binding proteins [BR:
ciz00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
142012728 (COL25A1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
142012728
NCBI-ProteinID:
XP_074849562
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Position
4:108745057..109213223
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AA seq
505 aa
AA seq
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MVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVP
GEPGKPGEQGLMGPQGPPGQKGSVGVPGVPGKDGQMGEPGLPGAVGEIGAPGLKGAPGER
GEKGDAGENGPKGDMGEKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPG
FIGPQGEPGLPGLPGTKGERGEAGPPGKGERGEPGIPGPKGKSGESGTRGPKGSKGDPGD
KGDSGTIGPRGPPGQKGEQGATEIIDYNGNIHEALQRITTLTVTGPPGPPGPQGAQGPKG
EPGSPGMPGAEGEQGPKGSKGDVGESGMPGEKGGIGLPGLPGANGMKGEKGDVGLPGPQG
PSVIGPPGPPGPHGSPGPMGPHGLPGPKGASGLDGKPGPRGLDGPVGPHGPAGPKGDSGE
KGAIGDPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDLGEKGEKGEKGKKGKKGPKGEKGE
QGAPGLDAPCPLGPDGLPMPGCWQK
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttcctaaaatcaatcatgggtttctctctgctgatcagcagctcattaaacgc
cgcctcattaagggtgaccaaggacaagctggacccccgggtcctccaggaccaccggga
cccagaggccctccaggagacactggcaaagatggcccccgagggatgcctggagtaccg
ggagagccaggaaaaccaggtgaacaagggttgatgggacctcagggacctccaggacaa
aagggttctgttggtgtacctggtgttccaggaaaagatggacagatgggtgagccaggt
ttgcctggcgcagtgggagaaattggagctccagggcttaagggtgcccctggggaacga
ggagaaaagggtgatgctggagaaaatggacccaaaggtgacatgggtgaaaagggtgac
cctggatcttctgctgcaggaattaagggagaacctggagaatctggtcgtcctggacaa
aagggtgaaccaggtcttcctgggcttcctggactccctgggataaagggtgaaccaggt
ttcattggcccacagggagagcctggattaccagggttaccaggaacaaagggtgaaaga
ggagaagcagggcctcctgggaagggtgagcgaggtgaacctggaattcctgggccaaag
ggaaaatcaggtgaatctggaactagaggcccaaaggggtccaagggtgatcctggagac
aaaggtgattcaggaacaataggaccaaggggcccacctggacaaaagggagaacaaggt
gcaacggagataattgactacaatggcaatatccatgaagctctgcagaggattaccacc
ctaactgtcacgggtccaccagggccacctggacctcaaggggcacaaggaccaaagggt
gaaccagggtctccaggaatgccaggtgctgaaggggagcagggtccgaaaggctcaaag
ggggatgttggtgagtctggcatgccaggagaaaagggaggaattggactcccaggctta
ccaggagccaatggtatgaaaggagaaaaaggagatgttggtttgcctggtcctcaaggt
ccttctgtcatagggccaccaggaccaccaggaccacatgggtcaccaggccctatgggc
ccccatggactgcctggcccaaagggagcatctggcttagacggaaagccaggaccccgg
ggtctagatggcccagtcggtccacatggcccagcaggtcctaaaggagatagcggtgaa
aagggagctattggtgaccctggacccagaggaccttatggtttacctggcaaagatggt
gagcctggccttgatggtttccctgggcctcgcggagaaaagggtgatctaggagaaaag
ggagaaaagggggaaaagggaaagaaaggcaaaaaggggcctaaaggggagaaaggagaa
cagggtgcccctggattagatgcaccttgcccattggggccggatggattaccaatgcct
ggctgttggcaaaagtga
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