Carettochelys insculpta (pitted-shelled turtle): 142013760
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Entry
142013760 CDS
T11194
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142013760 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciz03019
]
142013760 (MTREX)
03041 Spliceosome [BR:
ciz03041
]
142013760 (MTREX)
03009 Ribosome biogenesis [BR:
ciz03009
]
142013760 (MTREX)
03016 Transfer RNA biogenesis [BR:
ciz03016
]
142013760 (MTREX)
Enzymes [BR:
ciz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
142013760 (MTREX)
Messenger RNA biogenesis [BR:
ciz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
142013760 (MTREX)
Spliceosome [BR:
ciz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
142013760 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
142013760 (MTREX)
Ribosome biogenesis [BR:
ciz03009
]
Eukaryotic type
Pre-60S particles
Helicases
142013760 (MTREX)
Transfer RNA biogenesis [BR:
ciz03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
142013760 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
142013760
NCBI-ProteinID:
XP_074851665
LinkDB
All DBs
Position
5:complement(96582598..96659211)
Genome browser
AA seq
1034 aa
AA seq
DB search
MADAFGDELFSVFEEDSAASGAKKGKAGPAEAASKAGKHTDGKSPAHATNIPGKTKREAE
IDSTDYADYGKKTKIEDVTEDFNLAELMPKVKVQSVETVEGCTHEVALPANEDFVALKPR
SGKSAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPIASCLVMTTEILRSMLYRGSEVMREVAW
VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY
TDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGT
KGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKRMVEEVFNNAI
DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVNKL
EEQYNKIEIPNEESVVIYYKIRQQLAKLGKEIEEYVHKPKYCLPFLQPGRLVKVKNEDDD
FGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPAKPDEKGEMQV
VPVLVHLLSAISSVRLYIPRDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQ
GLKKVIQKIEAFEHRMYSHPLHNDSNLETVYKLCERKAQIAVDIRTAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATAL
LSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMD
VVYTWANGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgagttgttcagcgtgttcgaggaggattccgccgcctcg
ggggccaagaagggcaaagcgggcccggccgaggctgccagcaaagcggggaagcacaca
gatggcaaatctccggcacatgctacaaacatccccgggaaaaccaaaagagaggcagag
attgatagcacagattatgctgattatggaaagaaaacaaagatagaggatgttacagaa
gactttaatctagcagaactgatgccgaaagtaaaggtgcagtcagtcgagactgttgaa
ggttgcacacatgaggttgctcttcctgcaaatgaagattttgtagccctcaagccaaga
agtggaaaatctgcaaaggagtatccattcattcttgatgcttttcaaagagaagccatc
ctttgtgtggataataatcagtctgttctagtgtcagctcatacatcagctggcaaaact
gtatgtgcagaatatgcaatcgctttggctttgagggagaaacagcgtgtgatatttacc
agtcccattaaagctttgagtaaccagaagtatcgtgaaatgtatgaagaatttcaggat
gttggtttgatgactggagatgtcaccataaatcctatagcatcttgtcttgtaatgaca
acagagattttgagaagtatgctctacagaggttctgaggttatgcgagaagttgcctgg
gttatatttgatgaaatccattatatgagagactcagaacgtggtgtggtttgggaggag
accattattttgctacctgacaatgttcattatgtgtttctctctgccactattccaaac
gcccgccagtttgctgaatggatttgccatcttcataaacagccttgtcatgtgatttac
acagattatcgacctactcctctacaacattatatcttcccagcagggggagatggactc
caccttgtagttgatgaaaatggtgatttcagagaagataactttaacacagcgatgcaa
gtactaagagatgcaggtgacttagctaaaggagaccagaagggccggaagggaggaaca
aaaggaccatcaaatgtatttaagatagtgaagatgatcatggaaaggaatttccagcct
gtaattatattcagtttcagtaagaaagattgcgaagcctatgcacttcaaatgacaaaa
ttagacttcaatacagatgaagaaaaaaggatggttgaagaagtatttaataatgcaatt
gactgtctttctgatgaagacaagaaacttcctcaggttgagcatgtgcttcctctgtta
aagcgaggaatcggcatccatcatggtggtttgcttcctattttaaaggaaaccattgaa
atacttttttctgaaggattgataaaggccttatttgcaactgagacctttgctatggga
ataaatatgccagccaggacagtgttgttcacaagtgcccgcaaatttgatgggaaagat
ttcagatggatctcctcaggtgaatatattcagatgtctggtcgcgcaggacgtcgaggt
atggatgacagaggaatagtaattcttatggtggacgagaaaatgagcccaacgattggc
aaacaacttcttaagggctcagcagatcctttaaacagtgcttttcacttgacatacaac
atggtactgaacttgctccgagtagaggaaattaatccagaatacatgctagaaaaatcc
ttctaccaatttcaacattacagagctattcctggcgtagtggaaaaggtcaataaattg
gaagaacagtacaacaaaatagaaattccaaatgaggaaagtgtggtcatctactataaa
atccgacagcagcttgctaagctgggtaaagagattgaagaatacgttcacaaaccaaaa
tactgcttgccatttttacaaccaggcaggctggtaaaggtaaaaaatgaagatgatgat
tttggttggggagtggtagttaacttctccaagaaatcaaatgttaagcctaactctggt
gagctggacccattgtatgtggttgaagtcctgttacactgcagcaaagagagtttgaag
aattctgctactgaggctgcaaagccagcgaagcctgatgagaaaggagagatgcaggta
gttcctgttttggtgcatcttctctcagctatcagcagtgtccgactttacatacccaga
gacctgaggcccattgacaacaggcaaagtgtgttaaaatctatacaggaagtacagaag
cggttccctgatggagtaccgttattggaccccattgatgacatgggcatcaaagaccaa
ggactgaagaaagtcatccaaaaaatagaagcatttgaacataggatgtattcgcatccg
cttcacaatgattccaatttggagactgtatataaactttgtgagagaaaagcacagatt
gcagtggatattcgaacagcaaagcgagaactgaagaaagctagaactgtcttacaaatg
gatgagctcaaatgccgaaaacgtgtattgagaagattgggttttgccacatcgtctgat
gtcatagagatgaaaggacgagttgcttgtgaaatcagcagtgctgatgaactgctcctg
acagaaatgatgtttaatgggctgttcaatgacttatcggcagaacaagcaactgcatta
ctaagctgctttgtatttcaagagaattccagcgaaatgcccaaattgacagagcaattg
gcaggaccacttcgccaaatgcaggaatgtgctaaaagaattgccaaagtttcagcagaa
gctaaattggaaatcgatgaggaaaattatctaaactccttcagacctaacctgatggat
gtagtatacacatgggcaaatggagctacttttgctcacatctgcaaaatgacagatgtc
tttgaaggtagcataattcgttgtatgaggcggctagaagaattgcttcgacagatgtgt
caagcagcaaaggccattggaaacacagagctggaaaataagtttgcagaaggcattacc
aaaatcaagagagacattgtgtttgctgcaagcctctacctgtaa
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