KEGG   Carettochelys insculpta (pitted-shelled turtle): 142014018
Entry
142014018         CDS       T11194                                 
Symbol
PRPF19
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
ciz  Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03040  Spliceosome
ciz04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ciz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    142014018 (PRPF19)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    142014018 (PRPF19)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ciz03041]
    142014018 (PRPF19)
   04121 Ubiquitin system [BR:ciz04121]
    142014018 (PRPF19)
   03400 DNA repair and recombination proteins [BR:ciz03400]
    142014018 (PRPF19)
Enzymes [BR:ciz01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     142014018 (PRPF19)
Spliceosome [BR:ciz03041]
 Complex B
  Other components
   Prp19 complex
    142014018 (PRPF19)
 Complex C
   Prp19-CDC5 complex
    142014018 (PRPF19)
Ubiquitin system [BR:ciz04121]
 Ubiquitin ligases (E3)
  U-box type E3
   142014018 (PRPF19)
DNA repair and recombination proteins [BR:ciz03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    142014018 (PRPF19)
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40 WD40_WDHD1_1st Prp19 Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 WD40_Gbeta WD40_CDC20-Fz Beta-prop_WDR3_2nd WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_WDR75_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_Aladin Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_WDR41 NBCH_WD40 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_HPS5 U-box Beta-prop_Vps41 Beta-prop_DCAF4 PEP5_VPS11_N WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_SPT8 PROPPIN Beta-prop_Nup120_160 Beta-prop_ACSF4 eIF2A Cytochrom_D1 Beta-prop_VPS8 zf-Nse Beta-prop_DCAF12 RMC1_N Beta-prop_WDR35_TULP_N DUF1830 ATG16 Cep57_MT_bd
Other DBs
NCBI-GeneID: 142014018
NCBI-ProteinID: XP_074852116
LinkDB
Position
6:117812653..117820674
AA seq 504 aa
MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPVNNQPLSEEQLIDIKVAHP
IRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLIVPQAVPSSQPNIAGAGEPMDLGELVGMTPEIIQKLQDKA
TVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTG
GADKNVIVFDKSSEQILATLKGHAKKVTSVVFHPSQELVFSASPDATIRIWSVPSSTCVQ
VVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCALTCAQFHP
DGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWD
LRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTG
VAFGHHAKFIASTGMDRSLKFYSL
NT seq 1515 nt   +upstreamnt  +downstreamnt
atgtctctgatctgctcgatttcaaatgaggtcccagagcacccttgcgtatctccagtc
tctaaccatgtttatgagcgaaggctgattgaaaagtacatcgcagaaaatgggaccgac
ccagtaaacaaccagccgctgtctgaagagcagctgattgacatcaaagttgcccaccca
atccgacccaagccaccctcagccaccagcatcccagccattctgaaagcccttcaggac
gagtgggatgctgtcatgctgcacagcttcacactccgccagcagctgcagaccactcgc
caggagttgtcgcacgctctgtaccagcacgacgctgcctgccgtgtcattgcccgtctc
accaaagaggtcaccgctgccagagaagccttggcgactctgaaaccccaggctggcctc
atcgtcccccaggctgtgccatcttctcagcccaacatcgcgggtgctggcgagccgatg
gatctgggagagctggtgggcatgacccccgagatcatccagaagcttcaagacaaagcc
acggtgctgaccacggagcgtaaaaagagaggcaagacggttccagaggagctggtgaag
ccagaggagctcagcaagtaccggcaggtggcctcacatgtgggcctgcacagtgccagc
atcccggggatccttgctctggacctctgtccttccgataccaacaagatcctcactggc
ggggcagataaaaacgtcatcgtcttcgacaagagctcagagcagatcctggcgactctg
aaagggcacgccaagaaggtcaccagcgtagtgttccatccgtcccaggagctggtgttc
tctgcttctcccgatgccactatccggatctggtcggtcccaagttccacttgcgtgcag
gttgtccgggcccatgagagcgctgtgacagggctgagtctgcatgctacaggcgactat
ctcctaagctcctctgatgaccagtactgggctttctctgatatccagacgggccgtgtg
ctaaccaaggtcacggatgaaacctctggctgtgctctcacctgtgctcagttccaccca
gatgggctcatttttgggacggggactatggactctcaaatcaagatctgggacttgaag
gaacgcaccaacgtggccaacttcccagggcactctgggcccatcaccagcattgcattc
tctgagaacggatactacctggccacggccgctgatgactcctctgtcaaactctgggat
ctgcgcaagctcaaaaacttcaagacgctgcagctggacaacaactttgaggtgaagtcc
ctcatattcgaccagagtggtacctatttggctctgggcggcacggacgtccagatctac
atctgcaagcagtggacagagatcctccacttcacagagcacagtggcctgaccacaggc
gtggcctttggccaccatgcgaaattcatcgcttccacaggcatggacaggagcctgaaa
ttctacagtctgtag

DBGET integrated database retrieval system