Carettochelys insculpta (pitted-shelled turtle): 142014294
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Entry
142014294 CDS
T11194
Symbol
NRDE2
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear exosome regulator NRDE2
KO
K26109
nuclear exosome regulator NRDE2
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciz03019
]
142014294 (NRDE2)
Messenger RNA biogenesis [BR:
ciz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
142014294 (NRDE2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NRDE-2
TPR_14
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_19
Suf
Motif
Other DBs
NCBI-GeneID:
142014294
NCBI-ProteinID:
XP_074852741
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Position
6:32790587..32856856
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AA seq
1200 aa
AA seq
DB search
MLGKQAAPSCPAGRXGVSLASGGEEAEVRPMALFPAFAGAAEPGETPASGSEGSWRELDW
LNNPSFCTEDALKLHQHTAKAADLTAEKSQVIRSPSRAELSGESDTNEVLKKSTKKRKEK
KKKQYHHKKRKKKTRVESSNSETDSDSNCVKDKPRESNTNHKRKVAALNVEDKTSNVATS
RFVWLEDIQALTSEIFRTDKKPDPANWEYKSPYRGDIARYKRKGDSCLGIDVKKQHITWE
SSVVEKKQSHKRPERYFTKNSVRLLSADGIPVYSKSQSSSSSPGTFISVSQMDSDAAPAT
TCVNPLGIYDPLTTLWLQGKGPPEHETSKQQESQETSENVNSILMAKVEEYNKMVRENPR
DVHAWMEFVSFQDELMRGPSPYAFKEGDQEIRRKSLKLILEKKLAILERAIEINPNDVDL
KLAKLKLCTEFWEPSTLIKEWQKLVFLHPNNPVLWQKYLLFCQSQFSTFSVSKINNLYGK
CLSTLAAVQDGSMVSHPVLPGTEEAMLAIFLQQCHFLRQTGHSEKAVSLFQAMVDFSFFK
PDSVKDLPTRGQVEFFEPFWDSGEPRIGEKGAKGWKSWMHQQEKGGWIVINKPDEDEEDV
DEEQEVRDKTLPKWQIWLDIECSRETRHWLPWRPDKTKKQTEEDCEDPERQVLFDDLGPS
LIRLSRPDLQFQLLYSFLQFLGVPCGCSVFPSNLYIAMDENNIFDAEQSEGPLTSFDSLL
YGFNSIGHMDTMVRERQHIGHCKEGEEFIQNVFNSILPLLSGKEKSNLSVCWLQYEISKI
VQCLQIKNKKKLKSQGKKSKKLAKNLLKASENRNNLSLWKLYAYLEWLLGNTDDARKVFD
TALCLAGTEGLRNTELCNLSLLYASLEVELLESVEETVMSRAVHILTKLAESGPYVSYTG
QVLSVNILKARKAYEHALQDYLNESPVSDWDQAISSSQLVSLVGCYALFQYLTVGIDAAI
LIYRHISEKLKGSASQKFESIGENLGIQNFPTALEAVTLMHTNLLRYHMKVSIYPLNPLR
EALTAALKLYPSNQSLWRSYVQIQSRSHNASKARRFFDSVTRSTKSLEPWLFAVQAEEMR
KKLVENVQRADVGEIHSTIPETGLANRIKALFEHAIQTENGAHCPLLWRMYLNFLFSLGN
KESSKGLFYKALQNCPWAKVLYMDAIEYFPEQLQETLDLMTEKELRVRVPIEELDLLLED
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atgctcgggaagcaggcggcgccatcttgcccggctgggcganncggggtttccttagca
agcggaggggaagaagctgaggttcggcctatggctcttttcccggcctttgccggcgcc
gccgagcccggggagacgccagctagcggtagcgagggctcctggagagaattggactgg
cttaacaatccaagcttctgcacagaagatgcattgaaactgcaccagcacactgcaaag
gctgcagatcttactgctgagaaatcacaagttataaggagtccttcaagagcagagctc
tcaggagaaagtgacaccaatgaagttctaaaaaaatcaacaaagaaacggaaagaaaaa
aagaaaaagcagtatcaccacaagaaaagaaaaaagaaaaccagagtggaatcaagtaac
agtgagacagactcggacagcaattgtgtgaaggataaacctagagaaagtaatacaaac
cataaaagaaaagtagcagcactgaatgtggaagacaaaacatcaaatgttgccaccagt
cgctttgtttggcttgaggatattcaggctttgacgtcagaaatcttcagaacagacaag
aaaccagaccctgcgaactgggaatacaagtcaccatatcgaggggatatagcaagatac
aagaggaagggtgactcctgccttggtattgatgtaaagaagcagcatataacttgggaa
agttctgtggtagaaaagaaacaatcccacaagcgacccgaacgctacttcacaaagaat
agcgtgcgattattgagtgcagatggaattccagtttacagtaaaagccaaagttcttca
tctagcccaggcacttttatatcagtttcacaaatggacagtgatgctgctcctgcaaca
acctgtgtgaatcctcttgggatttatgatccattgaccacactctggttgcaaggaaaa
ggtccaccagagcatgagacttcaaagcagcaggaatcacaagagaccagtgagaatgtc
aactctattctaatggcgaaagtagaagaatataataagatggtcagagaaaacccaaga
gatgtccacgcttggatggaatttgtttcttttcaggatgagctaatgagaggacccagc
ccttatgccttcaaggagggagatcaagaaataaggagaaaatcactcaagctaatccta
gaaaagaaactggccattttagagagagctatagaaatcaacccaaatgatgttgatctg
aaacttgccaagttgaaactttgtacagaattctgggagccatcaactttgatcaaagaa
tggcagaaactggtatttttgcatcccaataatccagtgctgtggcagaaatatctctta
ttttgtcaaagtcagttcagcaccttttcagtttcaaaaatcaacaatttatatggaaaa
tgtttgagcactttggcagctgtacaagatggcagcatggtatcacatcctgtactgcct
ggcacagaagaagctatgttagctatttttcttcagcagtgccattttcttaggcagaca
ggccattctgagaaagctgtgtctttgttccaagccatggttgatttcagcttctttaaa
cctgacagtgtaaaagatctaccaacaagaggacaggtggagttctttgagccattttgg
gacagtggagagcctcggattggggaaaaaggagcaaaaggctggaaatcatggatgcat
caacaagaaaaaggaggctggattgtcatcaataaacctgatgaggatgaggaagatgta
gatgaagagcaagaagtaagggataaaactctacccaaatggcaaatttggctggacatt
gaatgttcccgtgaaacaaggcattggctgccttggcgacctgacaaaactaaaaagcag
actgaagaagattgtgaagacccagagagacaggtattgtttgatgatcttggaccatct
ttaatcagactttctaggccagatcttcagtttcagctgctctactcatttctgcaattc
ttgggagtcccatgtgggtgtagtgtctttccttcaaatctctatatcgctatggatgag
aacaacatctttgatgctgagcagtctgaagggccgctgacttcttttgactcactgctt
tatgggttcaatagtattggccatatggacacaatggtcagagagagacagcacatagga
cactgtaaggaaggagaggagttcatacaaaatgtcttcaattcaatattgccgttatta
tcaggaaaggaaaagtcaaacctttctgtctgttggctacaatatgaaatctcaaagatt
gttcagtgtctccaaataaaaaacaagaagaagctgaagtcacagggaaagaagagcaaa
aagttagccaagaatctccttaaggcatctgaaaaccgaaacaacctttccctctggaag
ctatatgcctatttggaatggttgcttggcaacacagatgatgctagaaaagtttttgat
actgctctttgcttggcaggaactgaagggttgagaaataccgaactgtgtaatctgagt
ttgctttatgcttcactggaagtggagctattagagagtgtggaggaaacagttatgtca
cgtgctgtacatatattgaccaaactagctgaaagtgggccatatgtgtcttacactgga
caagtgctatctgtgaatattttgaaagctcggaaggcgtatgagcatgcattgcaagat
tatttaaatgaaagcccagtctctgattgggatcaggccattagttctagccaactggtt
agtttagttggttgttatgcacttttccagtatttgaccgttggtattgatgctgctata
ttaatatatagacatatttctgaaaagcttaaaggttctgcttcacagaagtttgaaagc
attggagaaaatcttggtattcagaatttccccactgcccttgaagctgtcacactcatg
cacacaaatttactcaggtaccatatgaaagttagtatttaccctttaaatccactgcga
gaggcactaacagcagctttgaagttgtatccaagcaaccagtctctttggaggtcatat
gttcagatccaaagcaggtctcacaatgctagcaaagcacgaagattttttgatagtgtg
acaaggtctacaaaatccctagagccatggctttttgcagtccaagcagaggagatgaga
aagaagcttgtcgaaaatgtccaaagagcagatgttggagaaatacattcaaccattcct
gaaactgggttggcaaatcggattaaagctttgtttgaacatgcaattcagactgaaaac
ggtgcccattgtcctttgctgtggagaatgtatttgaactttctgttttctctaggaaat
aaagaaagcagcaaaggactgttttataaagctcttcagaactgtccctgggcaaaggtg
ctgtatatggatgcaatagagtattttccagaacagctgcaagagacccttgatctaatg
actgaaaaagaattgagagtaagagtacctatagaagaactggacctgctattggaagat
taa
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