Carettochelys insculpta (pitted-shelled turtle): 142014447
Help
Entry
142014447 CDS
T11194
Symbol
VPS18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz04140
Autophagy - animal
ciz04148
Efferocytosis
ciz05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
142014447 (VPS18)
04148 Efferocytosis
142014447 (VPS18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
142014447 (VPS18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ciz04131
]
142014447 (VPS18)
Membrane trafficking [BR:
ciz04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
142014447 (VPS18)
Hops complex
142014447 (VPS18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-RING_5
zf-C3HC4_2
zf-RING_Vps41
zf-RING_16
zf-RING_11
zf-RING_UBOX
STX17_N
Nup54_57_C
zf-ANAPC11
zf-RING_2
DUF5600
KNOX2
zf-rbx1
DUF1664
Motif
Other DBs
NCBI-GeneID:
142014447
NCBI-ProteinID:
XP_074853108
LinkDB
All DBs
Position
6:61076616..61087240
Genome browser
AA seq
974 aa
AA seq
DB search
MASILDEYEDSVSRSANMQQSRASVGIPHSGYVSARLEKEMPIFNKQRIDFTPPEKINSL
VVSCNQLCMSLGKDTLFRIDLGKADEPNQVELGRKDEARVYKMFLDHTGSHLVIALTTSE
CLYLNRSAQKVRVLSRWKGHLIESVGWNKFLGSEMNTGPILVGTAQGQIYEAEISVSEGS
LFGTNPDQYFRLVYTLEEEAGPAPVCCLEIERGLEGKCFIVATTHKRLFQFVGKAPEGTE
QQGFGFIFSMHADRLPSFREFPASFGYSEIAFYTPKLRSSPRSFAWMMGNGVLYGALDYG
RPDSILSDERVWVYPSDVDVSANKPISIVLTQFHFLLLLPDRVTAVCTLNGQVVFQDLFL
EKFGSLKRMIKDPTVGQIWIHTEKVVFRYHIQRESRDVWKMYMNINKFDLAKEYCKDRPE
CLDVVLAREAEHSFQNKRYLDSAKCYAMTQNYFEEIALKFIEAKQEEALMEFLIKKLANL
KSSEKTQITLLTTWLTELYLNRLGALEGDASKKNLYEETREKFCSFLSSPRNKECLFNNR
ASIYELLASHGDTEHMVYFSVIMQDYERVVAHHCQHDDYDEALNVLSRHRDENLFYKFSP
VLIQHIPRKVVDAWISMGKKLDARKLIPALVNYSQSGSTQQISEAIRYMEFCVCELEETE
QAIHNYLLSLYALCRPDSLLSYLEQAGTNPNRIHYDLKYALRLCAEHGHHRACVHIYKVM
ELYEEAVDLALQVDVDLAKSCADLPEEDEELRKKLWLKIARHVVQEEKDVKKAMACLSSC
NLLKIEDVLPFFPDFVTIDHFKEAICNSLEDYNKHIEELKREMEEATQSAKRIREDIQEM
RNKYGSVEPQEKCAACDFPLLNRPFYLFLCGHMFHYDCLFQAVFPSLPAYKQAKLEDLQK
KLGATSQPSKAHHRPKDTDATSLGKGQQSREQIKADIDDIVAAECVYCGELMIRSIDKPF
IDPQKYEEERQSWL
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggcctccatcctggacgagtacgaagattccgtgtcccgttcggcgaacatgcagcag
agccgcgccagcgtgggcatcccgcactccggatacgtgagtgcacggctggagaaggag
atgccaatctttaacaagcaaaggattgattttactcctccagagaaaattaacagtctg
gtggtctcctgtaaccagctctgcatgagccttggcaaagatacccttttcaggattgat
cttggcaaggcagatgaacctaatcaggtggagctgggacgcaaggatgaagccagagtc
tacaagatgtttttagaccacacgggatctcaccttgtgattgcactgaccactagtgaa
tgcctgtatttgaacagaagcgctcagaaggtgcgggtgctttcccgttggaaaggccac
ttgattgaaagtgtgggctggaataagtttctgggttcagagatgaacactggccctatc
ctggtgggaacagcccagggccaaatatatgaggctgagatctctgtcagcgagggaagt
ctctttggcaccaatccagaccagtatttccgtctggtctataccttggaggaggaagca
gggcctgccccagtctgctgtctggaaatagagcgagggctcgaagggaaatgctttatc
gttgccactactcataaaagactcttccagtttgttggcaaagcgcctgaggggacagaa
cagcagggctttggcttcatctttagcatgcatgcagaccgcctgcccagcttccgagag
ttcccagccagctttggctacagtgaaatagccttttacaccccaaagctgcgctcctcc
ccgcgctcctttgcttggatgatgggaaacggcgtcttgtatggcgcactggattatgga
cggcctgactctattctaagtgatgaacgggtctgggtatatccctctgatgtagatgtg
tcagctaacaagccgatctccatagtgctcacccagttccatttcctgctgctgttgcct
gacagagtgacggctgtgtgcactctgaacgggcaggttgttttccaagacctgttcctg
gagaagtttggctcattgaagcgcatgatcaaagatcccacagtcgggcagatatggatc
cacacagagaaagttgttttccgctaccacatacaacgtgaatcgagagatgtgtggaag
atgtacatgaacattaacaagtttgacctggccaaggagtactgcaaagaccgtcctgag
tgcctggatgttgtgttggcgagagaggcagaacactcgttccaaaacaagaggtacctt
gatagtgccaagtgttatgcaatgacccagaattactttgaggagattgcccttaagttc
attgaagccaagcaggaggaggcattgatggagtttttgatcaagaaactggccaactta
aagtcctctgagaagacccagataactttgctgaccacttggttaacagagctctacttg
aatcggctaggtgctctagagggtgacgcctccaaaaagaatctctatgaggagacacgg
gagaagttctgcagcttcctgagcagtcccagaaacaaagagtgtctgttcaataaccga
gcatccatctacgagctgctagcgagccatggagacacagaacacatggtctatttttca
gttattatgcaggactacgagagagtggtagcccatcactgccagcatgatgactatgat
gaagccctaaatgttctgtccagacacagagatgagaatcttttttacaaattctctccg
gttctcatccaacacattcccaggaaggtggttgatgcttggatctccatgggcaagaaa
ttggatgccaggaagctcatacctgcccttgtcaactacagccaaagtgggagcacccaa
cagatcagtgaagctattcggtacatggagttctgtgtgtgtgagctggaggaaacggag
caagccattcacaactatctattgtctctctatgctttgtgtcgtccagactcgctgctc
tcgtacctagaacaagcaggaaccaaccctaataggatccactatgacttgaagtatgca
cttcggttgtgtgcagagcacggacaccaccgagcttgtgtccacatttacaaagtgatg
gagttatacgaggaggcagtggatctggctttgcaggtagatgtggatctagcaaagtcc
tgtgcagacctccctgaagaggatgaggaactccggaagaagctctggttgaaaattgct
cgccacgtggtccaggaggagaaggacgtgaagaaggccatggcctgcctgtcaagctgc
aaccttctgaagattgaagatgtcttgccctttttccccgactttgtcaccattgaccac
ttcaaggaggctatctgcaactctctggaggactacaacaagcacattgaggagctgaag
agagagatggaggaagccacgcagagtgccaaaagaatccgggaggacatccaggagatg
agaaacaaatatggctctgtggagcctcaggaaaagtgtgctgcctgtgactttccgctc
ctaaatcgccctttctaccttttcctttgcggccacatgttccactatgactgcctgttc
caggcagtttttccaagcctgcctgcctacaagcaagctaagctagaagaccttcagaag
aagctgggagccacaagtcagccctccaaagcccatcatcgtcccaaggacacagatgcc
actagcttggggaagggacagcagagtcgggaacagattaaagcagacattgatgatatt
gtggcagctgaatgtgtgtattgtggggagttgatgatccggtcaattgacaagcctttc
attgacccacaaaagtatgaagaggagaggcaaagttggctctag
DBGET
integrated database retrieval system
