Carettochelys insculpta (pitted-shelled turtle): 142014796
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Entry
142014796 CDS
T11194
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ciz03009
]
142014796 (IGHMBP2)
03012 Translation factors [BR:
ciz03012
]
142014796 (IGHMBP2)
Enzymes [BR:
ciz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
142014796 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
142014796 (IGHMBP2)
Ribosome biogenesis [BR:
ciz03009
]
Eukaryotic type
Other ribosome biogenesis factors
142014796 (IGHMBP2)
Translation factors [BR:
ciz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
142014796 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_19
AAA_30
zf-AN1
Viral_helicase1
ResIII
Helicase_RecD
DEAD
nSTAND3
AAA_16
UvrD-helicase
AAA_22
IstB_IS21
SLFN-g3_helicase
Flavi_DEAD
AAA_25
Zot
ABC_tran
AAA
RL
PhoH
DnaB_C
NTPase_1
AAA_33
VWA_2
NPHP3_N
DAP3
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
142014796
NCBI-ProteinID:
XP_074854038
LinkDB
All DBs
Position
6:116526121..116602244
Genome browser
AA seq
997 aa
AA seq
DB search
MDVPDFVSRQLELLQEEREAEITETRAWRESVFLKELQRKGVCLVKLQVASQRTGLYGRL
LVTFQPRKYDPDAELPCNSFGPGDIVGLYESSGQGDPLSTGIVTHITPKLVTVAFEESRD
GLLSLDQEDSYHLLKLANDVTYKRLKKALNTLNQYRTGPACGLIDVLFFTSDPSAPSETK
PLKFYNELLDVSQKEAVSFSLAQKELAIIHGPPGTGKTTTVVEIILQAVQQGLKVLCCAP
SNIAVDNLVERLADYKEKILRLGHPARLLESIQHHSLDAVLARGDSAQIVADIRKDIDQA
FTKTKKTQDKGERSHFRNEIKALRKELKEREEAAMIEILTQANVVLATNTGTSSDGPLKL
LPENHFDLVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTIISNKAAAKGLSVSLM
ERLIQKYGESIVKMLTVQYRMHAAIMQWASTEMYCGQLTAHPSVAHHLLKDLPGVASTEE
TRIPLMLIDTAGCGLFELEVEDEQSKGNQGEVHLVGFHIQALVEAGVKARDIAVIAPYNL
QVDMLREHLCHRYPELEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAVTR
ARRHVAVICDSRTVSSHVFLKRLVDYLSEHGEVRTAFEYLSDIVPENYSHESSQGHGEQG
AGSKTSATSAPKPQPKSQKCKPNLKKPSTQQPATCPLKSVNEPWVERPEMKDNSGSFRVM
ILEFLESSKTQLDFPSSLNSHDRMLVHQMAEEYGLQHVSTGEGRERYISISKTTIASRSS
PTTAMSSSPVNADNVEQSPPSESQRPDKEALTPVTKRGSSMSSGKVDLKMLHLERMQREK
AKKEERARRNEALSIGFQEAVGGKDKNEAKGKAAVKTRADGPAEEDIDALISAAVKADNT
CGFPRCKASVVTVGQLCLHCNKRYCLSHHIPEIHGCGEKAKAQARQRISREGILYAGSGS
KDKSLDPAKRAHLQRRLDKKLNELTSQRKSKKKGKEE
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgccggacttcgtgtcccggcagctggagctgctgcaggaggagagagaggcc
gagatcacggagaccagggcctggagggaaagtgtctttctgaaagagctccagcgcaaa
ggggtctgcttggtcaaactgcaggtagccagtcaaagaactgggctctatggacggctg
cttgtaacatttcagcctagaaaatacgatccagatgcagagctaccctgtaacagcttt
gggcctggtgacattgtgggtctttatgaatcttctggtcagggtgatccgctttccaca
ggaattgtgacccacataacacccaaattggttactgtcgcctttgaggagtctcgagat
ggcctgttaagcttggaccaagaggattcctaccacctgctgaagttggccaatgatgtc
acctacaagaggctgaaaaaagctttaaacacactaaatcaatatcgcactggtccagcg
tgcggtcttattgatgtcctcttctttacttctgatccaagtgctccaagtgaaacaaag
cctttaaaattctacaatgaattgctggatgtttctcagaaggaggcagtttccttctcg
ctggcacagaaagaacttgccatcatccatggaccacctggcaccggcaaaaccaccact
gtggtcgagataatacttcaagctgtgcagcaaggactgaaagtcctgtgttgtgctccc
tcgaatattgcagtggataatctggtggaaaggctggctgactataaagaaaagatattg
cgtcttggtcaccccgctcgtctgctggaatccatccaacatcattccttggatgcggtc
ttggcacgtggcgatagtgcccaaatagtggcagatatcaggaaggatattgaccaggca
ttcacaaaaaccaaaaagacccaggacaagggggagcgaagccatttccgaaatgagatt
aaggcgctgagaaaggagttgaaagaacgagaagaagctgctatgattgaaatacttacc
caggctaatgttgttctcgcaacaaatacaggtacttcctctgatgggccactgaaatta
cttcctgaaaatcactttgatctggtggtgatagatgaatgtgctcaggcactagaagca
agctgctggatacctctgctgaaggccagaaagtgtatcctggctggggatcacaaacag
ctgcctcccacaatcatatctaacaaggctgcagcaaagggtctttctgtcagtttaatg
gagcgtctgattcagaaatacggtgagagcattgtgaagatgctgactgtgcaataccga
atgcacgcagccataatgcagtgggcctccacggaaatgtactgtggccaactcacagct
cacccttctgtggcacaccatttattgaaggacctgccgggagttgcttccacagaagag
actaggattcccttgatgcttatagatacagctggctgtggcttatttgagcttgaagtg
gaagatgaacagtctaaagggaatcaaggggaagtgcatcttgtaggctttcacatccag
gctttggtggaagctggtgttaaagcaagagacatcgcggtcattgctccttacaatctc
caggtggacatgctaagagagcatctttgtcacaggtatccagagttggaaattaaatct
gtagatggcttccagggacgggagaaggaggctgttgtgctgtcctttgtgagatcaaat
aggaagggtgaggtgggttttcttgctgaagaccggaggataaatgttgcagtgactcgt
gcccgacgtcatgtggcagtcatctgtgactcacggactgtcagcagccacgtctttctg
aaacggctggtggattatctgagtgaacatggggaagtgcggacagccttcgagtacctc
agtgacattgtgccagaaaattactctcatgagagctcgcaaggtcatggtgagcaaggg
gcagggtctaaaaccagtgcaacctctgctccaaaaccacaacctaaaagccagaaatgc
aaaccaaacctaaagaaaccatctacccagcaaccagcaacatgtcccttgaagagtgtg
aacgagccctgggtggaaagaccagagatgaaagacaattcaggcagtttccgagtcatg
atactggagttcctggagagcagcaagactcagttggattttccctcatccttaaactct
cacgacaggatgctggtgcaccaaatggctgaagaatacgggttgcaacatgtaagcact
ggggaggggagagagaggtacatcagcatcagcaagacaaccattgccagtcgttcctct
ccgaccaccgccatgagttcctctccggtgaatgcagacaatgttgagcaaagcccacct
tctgaatctcaaaggcctgataaagaggcactaacccctgtcacaaagagaggaagcagc
atgagctcagggaaggtggatctgaaaatgcttcacctggagagaatgcaacgagaaaaa
gccaaaaaagaagagagggccagaaggaacgaggcgctgagcattggttttcaggaagca
gttggaggaaaagacaaaaatgaagccaaaggaaaggctgcagttaaaaccagagcagat
ggcccagctgaagaagatattgatgccctgatttctgccgcagtgaaagcagacaacaca
tgcggtttccccagatgtaaagctagcgttgtgactgtggggcagctctgtctgcattgc
aacaagcgctactgcctcagccaccacatcccagagattcatgggtgtggggagaaggcc
aaagctcaagctcggcagagaattagcagagaaggaattctctatgctggcagtggatca
aaagacaagtcattggacccagcaaaaagagcccatctccagaggcggctagataaaaag
ctcaatgaactgaccagccagagaaagagcaaaaagaaaggcaaagaggaatga
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