Carettochelys insculpta (pitted-shelled turtle): 142014838
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Entry
142014838 CDS
T11194
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03420
Nucleotide excision repair
ciz04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
142014838 (DDB1)
09124 Replication and repair
03420 Nucleotide excision repair
142014838 (DDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ciz04121
]
142014838 (DDB1)
03400 DNA repair and recombination proteins [BR:
ciz03400
]
142014838 (DDB1)
Ubiquitin system [BR:
ciz04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
142014838 (DDB1)
DNA repair and recombination proteins [BR:
ciz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
142014838 (DDB1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
142014838 (DDB1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
142014838
NCBI-ProteinID:
XP_074854125
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All DBs
Position
6:complement(118378230..118407582)
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AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTPEGLRPVKEVGMYGK
IAVMELFHPKGENKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLERENKELKAFNIRLEELQVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLSVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHRE
TDNTLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVT
QEPKALVSEWKEPKGKNISVASCNSSQVVVAVGRALYYLEIHPQELRQISCTEMEHEVAC
LDITPLGDSNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYVKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacaactacgtggtgacggcgcagaagccaacggccgtgaacggctgcgtcacc
gggcacttcacttccgcggaggacctgaacttgctgatagcaaagaacacccgccttgag
atctatgtggtcacgccggaggggctgcggcccgtcaaggaggtgggcatgtatggcaaa
atcgccgtcatggagctcttccacccaaagggggagaacaaggacctgttgttcatcctg
acagccaaatataatgcctgtatccttgagtacaagcaaagtggtgagagcattgatata
atcacccgagctcatggcaatgtgcaggatcgcattggtcggccctcagagacgggtata
attggcataattgatccagagtgtcggatgattggattgcggctctatgatggccttttt
aaggtcattcctctggaacgggaaaacaaggaattaaaggcctttaatatccggctggag
gaactacaggtcatcgatgtcaagttcctctatggctgccaggctccgaccatctgcttt
gtttaccaggaccctcagggccgccatgtcaaaacgtatgaggtatccctgcgtgagaag
gaattcaacaaaggtccatggaaacaggagaatgtagaggcagaagcctccatggtaatt
gcagtgcccgagccctttggaggagccattatcattgggcaagagtccatcacctaccac
aatggcgataaatatttggctatagccccacccatcatcaagcaaagtacaattgtttgc
cacaatcgcgtggatcccaatgggtctcgttacctcctgggggatatggagggccgtctc
ttcatgctgcttctggagaaggaggagcagatggatggcacagtcaccctgaaggacctg
cgtgtggagctgcttggagagacatccatcgcggagtgcctgacctacctggacaacggg
gttgtctttgtcggctctcggcttggggactcccagcttgtgaagctcagcgtggacagt
aatgaacaaggctcctatgtagtagccatggaaaccttcaccaacctgggccctatcgtg
gacatgtgtgtggtggatctagagagacaaggccaagggcagctggtcacgtgctctggc
gcctttaaggagggctccctgaggatcatccggaacgggattgggattcacgaacatgcc
agcattgacctgccggggattaaaggcctatggcccttgaggtcagactcacaccgtgaa
actgacaacaccttggtgctatcgtttgtgggccaaaccagggttttgatgttaaatggg
gaggaagtggaggaaacagagctgacaggatttgtggatgatcaacaaaccttcttttgt
ggcaatgtggcccatcagcagctaatccagatcacgtctgcctctgtgcggctggtcact
caggagcccaaagccctggtgagtgaatggaaagagcccaaggggaagaacatcagtgtg
gcttcctgtaacagcagccaggtagtggtggctgtgggacgagcactctactacctcgag
atccacccccaggagctcaggcaaataagctgcacagagatggagcatgaagtggcctgc
ctagacatcacccctctgggagactccaacggcatgtcccccctgtgtgccatcggcctc
tggactgacatctccgcccgcatcctcaagctgccctcctttgagctgctacacaaggag
atgctgggaggagagatcatcccccgctccattctgatgaccacctttgagagcagtcac
tatctcctctgtgcccttggagatggggctctcttctactttgggctgaacattgagaca
ggtttgctgagtgaccgtaagaaagtaacactgggcacccagcccactgtcctgaggaca
ttccgttcgctctccaccaccaatgtctttgcctgctccgaccgccccactgtgatctac
agcagtaaccacaagctggtcttctccaatgtcaacctcaaggaggtgaactacatgtgc
cctctcaactcagatggctaccctgacagtctggcattggccaacaacagcactctgaca
attggcaccattgacgagatccagaagctgcacatccgcacagttcctctctacgagtcg
cccaggaagatctgctatcaagaggtgtctcagtgcttcggtgtgctttcaagtcgcatc
gaggtgcaggatgccagtgggggcaccactgcactgagacccagtgccagcacccaggcc
ctgtcaagcagcgtcagctccagcaagctgttttccagcagtactgcgccacacgagacg
tcctttggagaggaggtggaggtgcacaatctactcatcatagaccaacacacctttgaa
gtgctccatgctcaccagtttctgcagaatgaatatgccctcagcctggtctcctgcaaa
ctgggcaaggatcccaacacctacttcatcgtgggcacagccatggtgtatcctgaggag
gctgagcctaaacagggccgtattgtcgtcttccattactcagatgggaaactgcagagt
ctggctgagaaggaagtgaaaggggccgtgtattccatggtagagttcaatggcaagctt
ttagccagcatcaacagcacggtgcgtttgtacgagtggacggcggagaaggagctgcgt
acagagtgtaaccattacaataacatcatggctctctatgtgaagaccaagggggacttc
atcctggttggagatctgatgcgctccgtcctgcttcttgcctacaagcccatggagggt
aacttcgaggagattgctcgagacttcaaccccaactggatgagtgccgtggagattttg
gacgatgacaatttcctgggagcagagaatgcttttaacctgtttgtgtgccagaaggac
agcgctgccacgactgacgaggaacgccagcacctgcaggaagtggggctcttccacctg
ggggagtttgtcaacgtgttctgccatggttctctggtcatgcagaacctgggcgagacg
tccacgccgacgcagggctcggtgctctttggcaccgtcaacggcatgatcgggctggtg
acctctctgtcggaaagctggtacaacctcctgctggatatgcagaacaggctcaataaa
gtcatcaagagtgtggggaagattgagcactctttttggagatcgtttcacactgagcgc
aagaccgagccagccacagggttcattgatggtgacttgattgaaagcttcctggacata
agccggcccaaaatgcaggaggtggtggcaaacctacagattgacgatggcagtggcatg
aagagggaggccaccgtggatgacctgataaagatcgtggaggagctgacccggatccat
taa
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