Carettochelys insculpta (pitted-shelled turtle): 142014849
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Entry
142014849 CDS
T11194
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142014849 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciz03019
]
142014849 (PATL1)
Messenger RNA biogenesis [BR:
ciz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142014849 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
142014849 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
142014849
NCBI-ProteinID:
XP_074854154
LinkDB
All DBs
Position
6
Genome browser
AA seq
776 aa
AA seq
DB search
MFRYQSLEDCPLDEDEDAFQTLGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELEDKP
AAARELEDGTVSDEMDLLGHHEENLAERLSKLVIENELEDPAIMQAVQTQPSMLGDPPYS
PLQQPGGLNSSIWDGSEVLRRIRGPLLTQEVPSVSVLEYALPQKPPQAQEDERDLSERAL
PRRSSSPVIGSPPVRAVPIGTPPKQAAMPNFNQQILCPKPVHIRAPMQQRYPAPYGERMS
PNQLCSVPNSSLLGHPFPPSVTPVFTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLAS
MNPKLLQGRVGQMVPPASGFRAFFGAPPAPHPSQQQHPPGPGSHLQNIRPHPQMFRPDTT
HLHPQHRRLLHQRQQQNRNQHRSLNGSAGDRGSHRSSHQEQLRKDPYANLMLQREKDWVS
KIQMMQLQSTDPYLDDFYYQNYFQKLEKVSAADELHGDGPKKERTKLITPQVAKLEHAYK
PVQFEGSLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKTYSLLL
DVEDYERRYLLSLEGERPALMEERKQKICSMYDNVRGKTLGQERPSDDHFVQIMCIRKGK
RMVARILPFLSTEQAADILMATARNLPFLIKKDAQDEVLLCLLRPFSLVLYHLPSGMVTS
LLQQLANLPQSATAPAPANLHLAAVLQNKFGLSLLYLVLSRGEELQSSHAATELMQDNQW
TELMFTATRELLRIPQAALAKPVSTPSNLLSLFSRYVDQQKLNVLETKLQLVQGIR
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctaccagtccctagaagactgtcctttggatgaggatgaagatgcctttcag
accctgggtgaggaggatgaagatatcgaccagttcaatgatgacacgtttggagcgggt
gctgttgatgatgactggcaggaggcacatgagcggcttgcagaactggaagacaagcct
gcagcagccagagagctggaagatgggacggtcagtgatgaaatggacctgctggggcac
catgaagagaacctggctgagcggttgagcaagctggtcattgagaatgaactggaagat
ccagccatcatgcaggctgtgcaaacccagccttctatgctaggtgacccaccatactct
cctttacagcaaccaggaggcctcaattccagcatctgggatggatctgaagttctgagg
cgcatccgaggaccacttctcactcaggaggtgccctcggtgtctgtgctggaatatgct
ctgcctcagaaacccccacaggctcaggaggacgaacgggatctctcagagcgggcactg
cctaggcgctcgtcctccccagtcattgggagccccccggtccgggctgtccccattggt
accccaccaaagcaggctgccatgcccaactttaaccagcagatcctgtgcccaaagcct
gttcacatccgggccccaatgcagcagcgttatcctgccccttatggagagaggatgtcc
ccgaaccagctctgcagtgtgccgaattcctccctcctgggccacccgtttcctcccagt
gtcactcctgttttcacccaccttcagagagcgcaacttctaggaggagcccaggctggc
cgaatgtctcctagtcagtttgctcgtgtctctggactcgttggcagccccctcgcgtcc
atgaaccccaagttgcttcaaggcagagttgggcagatggtgcctccggctagtgggttc
cgtgccttttttggggcgcctccagcgccacacccatcccaacagcagcacccgccaggt
cctgggtcccacttgcagaacatcaggcctcacccgcagatgttcagaccagatacgact
caccttcacccccagcatcggcggctcttgcatcagagacagcagcagaacaggaaccag
caccggagtctgaatggctcagcaggagaccgagggagccaccggagcagccatcaggag
cagctgcggaaggacccctacgccaatctcatgctgcagcgggaaaaggactgggtgtca
aagatccagatgatgcagttgcaaagcactgacccttacctggatgacttctactatcag
aattacttccagaagctggagaaagtgtcagcggcagacgagctgcatggcgatggcccc
aagaaagaacgtactaaactcatcacacctcaggtggccaaattagagcacgcctacaag
ccagtgcagtttgagggatcgctcgggaagctcacggtctccagcgtaaacaacccccgg
aaaatgatcgatgcggtggtgacctcccggagcgaggatgacgagacgaaggagaagcag
gttcgagacaagagacgtcagaccctcgtcaccattgagaagacgtacagccttctcctg
gatgtggaggactacgagcgacgctacctcctgagcctggagggtgagcggccggccctg
atggaggagagaaagcagaagatctgcagcatgtatgacaacgtgagggggaagacgctt
ggccaagagaggccgagtgacgaccactttgtgcaaatcatgtgtatccggaaagggaag
cgtatggttgcccggatcctgcctttcttgtccacggagcaggcagctgacatactcatg
gcaacagccagaaacctgcccttccttatcaagaaggatgctcaggatgaggtgctgctg
tgcctgttgaggcccttctctctcgttctctatcatcttccatcggggatggtcaccagc
cttctgcagcagcttgcgaacctacctcagagtgccacggcgccggcgcctgccaacttg
caccttgcagctgtgctccagaacaagtttggcctgtccctgctgtacttggtcctgagt
cgtggggaggagttgcagagttcccatgctgctactgagctaatgcaggacaaccagtgg
acggagttgatgttcacggcaacccgggagcttctgcggatccctcaagcagcacttgca
aagccggtgtctaccccctctaacctgctgtcccttttttctcgctacgttgatcagcag
aagctgaatgtgctggagacgaagttgcagttagtgcaggggatacggtag
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