Carettochelys insculpta (pitted-shelled turtle): 142016657
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Entry
142016657 CDS
T11194
Symbol
IFIH1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz04622
RIG-I-like receptor signaling pathway
ciz05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
142016657 (IFIH1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
142016657 (IFIH1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ciz04054
]
142016657 (IFIH1)
Enzymes [BR:
ciz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
142016657 (IFIH1)
Pattern recognition receptors [BR:
ciz04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
142016657 (IFIH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
CARD_2
RIG-I_C
DEAD
ResIII
Helicase_C
CARD
SWI2_SNF2
SNF2-rel_dom
DUF3638
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
142016657
NCBI-ProteinID:
XP_074856852
LinkDB
All DBs
Position
8:42058648..42102589
Genome browser
AA seq
1011 aa
AA seq
DB search
MAAQSQEEQFLYLISCFRPRLVQCIQVAPVLDVLDGLSVPEKERIRAVAVQQGDPQAAGY
LLDAVARGCQQQGWIQQFVTALQQAGSHIAASYVNPSLSELPSPAEEAEHDVCVQLVQVL
YSTLVDKLMPLEVTNKCVEKGLLQEEDRERILAVIENRRNREGARELLSTLIKKKDWFSP
FLAVLRETKHEELAGELSGNISETENNKNGIKQPATTDEDVETEELLASEAGEGLKQRDE
TNDSLASESMTLGTSFEDTSVVSESDVSLPDTSVSFLNESLGHSSTTSGDSDEDDMDKRA
SPEPELILRDYQMEVAKPALNGQNVIICLPTGSGKTRVSVYITKEHLDKKKRASEPGKVI
VLVNKVPLVEQHFRKEFNPFLKPWYRVAGLSGDSQLKISFPEVVRKNDVIISTAQILENS
LLNATKDDEEGVQLSDFSLIVIDECHHTQKEGVYNNIMRRYLKEKMKNRRLKKENKPLIP
QPQILGLTASPGVGGAKTPQKAEEHILKICANLDAYRLMTVEEHSSQLKDQVKEPYKKFV
IADDKRRDPFREKIIEIMTEIQNYCEFNPTFEFGTQPYEQWAVKEEKKAAKEEKRKERVC
AEHLKKYNDALQINDTIRMIDAYNHLNKFYKEEKSKKTVKEEDEDDDEPVASKLDETDKF
LMKLFYAKKKHLKELAGKPEYENEKLTQLRNTLMEEFTKTGEARGIIFTKTRQSAFALFQ
WIKDNTKFEEVGVKAHYLIGAGHNSEFKPMTQNEQREIISKFRAGNVNLLIATTVAEEGL
DIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAAGGSGAVERENVNIFREQMMYK
AIRRVQKMPQEEYLNKIESFQMQSIMEKKMKTKRDQLKTYKANPSLITFLCKNCHKVKCS
GEDIQVIENMHHVNVKKEFQDLYNIRENKTLQEKHADYQTNGEIICRDCGQAWGNMMVHR
GVDLPCLKIRNFVVVFKGKKPSNQIFKKWGELPVKFPVFDYAEHYVSSDED
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atggcggcccagtcccaagaggagcagttcctctatctgatctcctgcttcaggccccgg
cttgtacaatgcatccaggtggcgccggtgctggacgtcctggacgggctgagtgtgccg
gagaaggagcggatccgggcggtggctgtgcagcagggcgacccccaggcggccgggtac
ctgctggacgccgtggcgcggggctgccagcagcagggctggatccagcagtttgtcact
gcgctgcagcaggcgggcagccacatagccgccagctacgtgaaccccagcctgagcgag
ctgccctcgccggcggaggaggccgagcacgacgtgtgcgtgcagctggtgcaggtgctc
tatagcaccctggtggacaagctgatgccgctggaggtcactaacaagtgcgtggagaag
ggactcctgcaggaggaggaccgggagcggatcttagctgtaattgaaaatcgtaggaat
agagaaggtgcacgtgaattgttaagtacattaataaagaagaaagattggttttctcca
tttttggctgtcctgcgtgaaactaagcatgaagagcttgcaggtgaactaagtggaaat
atatcagaaacagaaaataacaaaaatgggatcaagcagccagctactacagatgaggat
gtggagactgaagagctactggcctctgaagcaggggagggcctgaagcagagagatgaa
acaaatgatagtctggccagtgagagcatgacattaggaacatcttttgaagacacttct
gtggtctcagaatctgatgtcagtttgccagatacaagtgtcagtttcttaaatgaaagc
ctgggacacagtagcaccacaagtggtgattcagatgaagacgatatggacaaaagagct
tcccctgaaccagagctaattctcagagattaccagatggaagttgcaaaaccagcactg
aatgggcagaatgttattatatgtctccctacaggcagtggtaaaacaagagtgtctgtt
tacattaccaaagaacatttggataagaaaaaaagagcatcagagcctggaaaagttata
gtactcgtaaataaggtgccattagtggagcaacatttcagaaaagagttcaacccattt
ttgaagccttggtatcgggttgcaggattaagtggtgattctcagttgaaaatctcattt
cctgaagttgtaagaaaaaatgatgtcattatcagtactgctcagatcctcgagaactct
ctgctgaatgcaaccaaagatgacgaagaaggtgtccagttgtcagacttttctctcatc
gttattgatgaatgtcatcacacccagaaggaaggtgtctacaataatataatgcgacgt
tatttaaaagaaaaaatgaaaaaccgtcgtctgaaaaaagaaaacaaacccctgattcca
cagcctcagatcctgggattgacggcttcccctggtgtgggaggggcaaaaactccacag
aaagctgaagaacatattctgaaaatttgtgctaatcttgatgcatatagactcatgact
gttgaagagcactcctctcagctgaaagatcaggtgaaggagccatataagaagtttgtg
attgcagacgacaaaagaagggatccatttagagagaaaataatagaaatcatgacagag
attcaaaattactgtgaattcaacccaacatttgaatttggaactcagccctatgaacag
tgggcagtaaaagaggagaaaaaagctgcaaaagaagaaaaacgtaaagaacgtgtttgc
gcagagcacttaaagaaatataatgacgccttgcaaattaatgatactatccgaatgatt
gatgcatacaaccacctcaataaattctataaggaggaaaaaagcaagaaaacagtaaaa
gaagaagatgaagatgatgatgaaccagtagcatcgaaactagatgaaacagataagttc
ctgatgaagttattttatgcaaaaaagaagcatctgaaagagttggctggaaagccggaa
tatgaaaatgagaagctaacacagttgcgaaacaccttaatggaggagttcacaaagact
ggtgaagctaggggaattatcttcacaaagactcggcaaagtgcctttgccctgtttcag
tggattaaagacaacacgaaatttgaagaagtgggagttaaagctcactacctcatcgga
gccgggcataacagtgaatttaaacccatgactcagaatgaacaaagagaaatcatcagt
aaatttcgtgccgggaacgtaaacctacttattgctactactgtagctgaagaaggcctg
gatatcaaagaatgtaacatagttatccgctatggtcttgtcactaatgaaatagctatg
gtgcaggcccggggtcgagccagagcagatgagagcacctacgttctggtggcagcaggt
ggatcgggagctgttgaacgtgaaaatgttaatatatttcgtgagcaaatgatgtataaa
gctattcgacgtgtccaaaagatgccacaggaagagtatctaaataagattgagagcttt
cagatgcaaagtataatggaaaaaaagatgaagacaaagagagatcagcttaagacttac
aaggcaaatccttcactaataacgttcctttgcaagaattgtcacaaagtgaaatgttct
ggggaagatatacaagttattgaaaacatgcatcatgtcaatgtgaaaaaggagttccag
gacctttacaatataagagaaaataagacactgcaagaaaagcatgcagattaccaaaca
aatggtgaaattatttgtagagactgtgggcaagcatggggaaatatgatggttcaccga
ggtgtagacctgccttgcttaaagatcagaaattttgtagttgtattcaagggtaagaaa
ccctcaaaccaaattttcaaaaaatggggagaactgccagtcaagttccctgtctttgac
tatgcagagcattatgtttccagtgatgaagactaa
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